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L3_069_000G1_scaffold_1199

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_1199_1
unknown

Not on your lists

564..758
DNA (195bp) protein (65aa)

This feature has no annotations

L3_069_000G1_scaffold_1199_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(680..1171)
DNA (492bp) protein (164aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTU5_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA80548.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
helix-turn-helix family protein
L3_069_000G1_scaffold_1199_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1315..1509
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22509.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_1199_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1553..1708
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80546.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_069_000G1_scaffold_1199_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1705..1893
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22510.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_1199_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2172..3584
DNA (1413bp) protein (471aa)
Virulence-associated protein E n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTU0_9CLOT
Virulence-associated protein E {ECO:0000313|EMBL:EEA80543.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted P-loop ATPase and inactivated derivatives
L3_069_000G1_scaffold_1199_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4708..5589
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXQ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23256.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
metal-dependent membrane protease
L3_069_000G1_scaffold_1199_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5727..6650)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23257.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Transposase IS116/IS110/IS902 family
L3_069_000G1_scaffold_1199_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7252..7446
DNA (195bp) protein (65aa)
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39 n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFY5_9CLOT
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39 {ECO:0000313|EMBL:CDC23258.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP-binding cassette subfamily B protein
L3_069_000G1_scaffold_1199_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7908..9026
DNA (1119bp) protein (373aa)
Monogalactosyldiacylglycerol synthase, C-terminal domain protein n=2 Tax=Clostridium RepID=B6FTT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23260.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glycosyltransferase Family 28-like b-glycosyltransferase
L3_069_000G1_scaffold_1199_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9041..9658
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PXR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23261.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_1199_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9655..10281
DNA (627bp) protein (209aa)
HAD hydrolase, family IA, variant 1 n=2 Tax=Clostridium RepID=B6FTT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23262.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase
L3_069_000G1_scaffold_1199_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10341..11732
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=2 Tax=Clostridium RepID=B6FTT2_9CLOT
L3_069_000G1_scaffold_1199_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11802..12491
DNA (690bp) protein (230aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FTT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23264.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_069_000G1_scaffold_1199_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12481..13671
DNA (1191bp) protein (397aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FTT0_9CLOT
histidine kinase
L3_069_000G1_scaffold_1199_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13745..14659
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23266.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA repair exonuclease
L3_069_000G1_scaffold_1199_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14662..16173
DNA (1512bp) protein (504aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23267.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_1199_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16157..17188
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=2 Tax=Clostridium RepID=R6PFZ3_9CLOT
L3_069_000G1_scaffold_1199_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17182..17733
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTS6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23269.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_1199_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17950..18189
DNA (240bp) protein (80aa)
Oxidoreductase, FAD/FMN-binding protein n=2 Tax=Clostridium RepID=B6FTS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23270.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
NADH:flavin oxidoreductase
L3_069_000G1_scaffold_1199_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18662..19057
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTS3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23271.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_1199_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19208..20392)
DNA (1185bp) protein (395aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=2 Tax=Clostridium RepID=B6FTS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23272.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_1199_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20392..21387)
DNA (996bp) protein (332aa)
DNA replication protein DnaC n=2 Tax=Clostridium RepID=B6FTS1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23273.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA replication protein DnaC
L3_069_000G1_scaffold_1199_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21404..22441)
DNA (1038bp) protein (346aa)
DnaD domain protein n=2 Tax=Clostridium RepID=B6FTS0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23274.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DnaD and phage-associated domain
L3_069_000G1_scaffold_1199_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22584..23960)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=2 Tax=Clostridium RepID=B6FTR9_9CLOT
L3_069_000G1_scaffold_1199_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24166..25440
DNA (1275bp) protein (425aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=2 Tax=Clostridium RepID=B6FTR8_9CLOT
L3_069_000G1_scaffold_1199_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25437..26555
DNA (1119bp) protein (373aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|SAAS:SAAS00083544};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ADP-glucose pyrophosphorylase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=2 Tax=Clostridium RepID=B6FTR7_9CLOT
L3_069_000G1_scaffold_1199_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26607..26888
DNA (282bp) protein (94aa)
Putative septation protein SpoVG n=2 Tax=Clostridium RepID=B6FTR6_9CLOT
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein, involved in the regulation of septum location
L3_069_000G1_scaffold_1199_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26976..27659
DNA (684bp) protein (228aa)
RNA pseudouridine synthase {ECO:0000313|EMBL:EEA80518.1}; EC=5.4.99.- {ECO:0000313|EMBL:EEA80518.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
RNA pseudouridine synthase n=2 Tax=Clostridium RepID=B6FTR5_9CLOT
L3_069_000G1_scaffold_1199_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28023..29465
DNA (1443bp) protein (481aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
prolyl-tRNA synthetase, family I (EC:6.1.1.15)
Proline--tRNA ligase n=2 Tax=Clostridium RepID=B6FTR4_9CLOT
Displaying items 1-30 of 43 in total

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