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L3_069_000G1_scaffold_58

Search features with annotation key words

Displaying items 1-30 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_58_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1518)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22261.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
N-acetylmuramoyl-L-alanine amidase
L3_069_000G1_scaffold_58_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1542..2066)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJX9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22262.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sporulation and spore germination.
L3_069_000G1_scaffold_58_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2298..3215)
DNA (918bp) protein (306aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22263.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dTDP-glucose pyrophosphorylase
L3_069_000G1_scaffold_58_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3233..3496)
DNA (264bp) protein (88aa)
Phosphocarrier, HPr family n=2 Tax=Clostridium RepID=B6FJA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22264.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphocarrier HPr family protein
L3_069_000G1_scaffold_58_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3516..4763)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22265.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_58_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4741..5622)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22266.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00159
L3_069_000G1_scaffold_58_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5656..6714)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83894.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_069_000G1_scaffold_58_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6715..7110)
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJB3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22268.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_58_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7168..7872)
DNA (705bp) protein (235aa)
ComF family protein n=2 Tax=Clostridium RepID=B6FJB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22269.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted amidophosphoribosyltransferases
L3_069_000G1_scaffold_58_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7910..10120)
DNA (2211bp) protein (737aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFA7_9CLOT
helicase, RecD/TraA family protein
L3_069_000G1_scaffold_58_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10215..11204)
DNA (990bp) protein (330aa)
Cell shape determining protein, MreB/Mrl family n=2 Tax=Clostridium RepID=B6FJB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22271.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rod shape-determining protein MreB
L3_069_000G1_scaffold_58_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11309..14146)
DNA (2838bp) protein (946aa)
UvrABC system protein A n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJY8_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
excinuclease ABC, A subunit
L3_069_000G1_scaffold_58_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14156..16144)
DNA (1989bp) protein (663aa)
UvrABC system protein B n=2 Tax=Clostridium RepID=B6FJB8_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
excinuclease ABC, B subunit
L3_069_000G1_scaffold_58_14
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16189..16578)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NCI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC08885.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_069_000G1_scaffold_58_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16828..17001)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22275.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_58_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16991..18034)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22276.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Virulence protein
L3_069_000G1_scaffold_58_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18340..18879)
DNA (540bp) protein (180aa)
YbaK/proline--tRNA ligase associated domain protein n=2 Tax=Clostridium RepID=B6FJC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22277.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_58_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18978..19355)
DNA (378bp) protein (126aa)
Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=B6FJC5_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA83859.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC family transcriptional regulator
L3_069_000G1_scaffold_58_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19356..19901)
DNA (546bp) protein (182aa)
Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=B6FJC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22279.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
AraC family transcriptional regulator
L3_069_000G1_scaffold_58_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19918..20298)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22280.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein DUF4190
L3_069_000G1_scaffold_58_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20328..21230)
DNA (903bp) protein (301aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Dihydroorotate dehydrogenase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUU2_9CLOT
dihydroorotate dehydrogenase 1B
L3_069_000G1_scaffold_58_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21230..22012)
DNA (783bp) protein (261aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=2 Tax=Clostridium RepID=B6FJC8_9CLOT
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_069_000G1_scaffold_58_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22025..22951)
DNA (927bp) protein (309aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=2 Tax=Clostridium RepID=B6FJC9_9CLOT
L3_069_000G1_scaffold_58_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22964..24250)
DNA (1287bp) protein (429aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Dihydroorotase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN59_9CLOT
dihydroorotase
L3_069_000G1_scaffold_58_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24340..25530)
DNA (1191bp) protein (397aa)
C-terminal peptidase (prc) (EC:3.4.21.102)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22285.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_58_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25547..26677)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22286.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane-bound metallopeptidase
L3_069_000G1_scaffold_58_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26686..27597)
DNA (912bp) protein (304aa)
Cell division protein FtsX n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK02_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell division protein FtsX
L3_069_000G1_scaffold_58_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27597..28274)
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=2 Tax=Clostridium RepID=B6FV59_9CLOT
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EEA80077.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cell division ATP-binding protein FtsE
L3_069_000G1_scaffold_58_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28292..29380)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN63_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22289.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, CdaR family
L3_069_000G1_scaffold_58_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29570..30250)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFC2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22290.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Teichoic acid biosynthesis proteins
Displaying items 1-30 of 250 in total

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