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L3_069_000G1_scaffold_699

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_699_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..5660)
DNA (5658bp) protein (1886aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CGB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD26409.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_069_000G1_scaffold_699_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5941..7053)
DNA (1113bp) protein (371aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=2 Tax=Clostridium RepID=R6PIB9_9CLOT
L3_069_000G1_scaffold_699_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7101..7832)
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=2 Tax=Clostridium RepID=B6FLH2_9CLOT
L3_069_000G1_scaffold_699_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8037..8864)
DNA (828bp) protein (276aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FLH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23313.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Cof-like hydrolase
L3_069_000G1_scaffold_699_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8888..10567)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QMX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23312.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycosidase
L3_069_000G1_scaffold_699_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10586..11413)
DNA (828bp) protein (276aa)
PTS system mannose/fructose/sorbose family IID component n=2 Tax=Clostridium RepID=B6FLG8_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EEA83154.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system IID component, Man family (TC 4.A.6)
L3_069_000G1_scaffold_699_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11406..12221)
DNA (816bp) protein (272aa)
PTS system sorbose-specific iic component n=2 Tax=Clostridium RepID=B6FLG7_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEA83153.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_069_000G1_scaffold_699_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12249..13220)
DNA (972bp) protein (324aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
PTS system fructose IIA component n=2 Tax=Clostridium RepID=B6FLG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23309.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_699_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13449..14474)
DNA (1026bp) protein (342aa)
Transcriptional regulator, LacI family n=2 Tax=Clostridium RepID=B6FLG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23308.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Transcriptional regulators
L3_069_000G1_scaffold_699_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14551..15078)
DNA (528bp) protein (176aa)
50S ribosomal protein L17 n=2 Tax=Clostridium RepID=B6FLG3_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L17P
L3_069_000G1_scaffold_699_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15186..16145)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium RepID=B6FLG2_9CLOT
DNA-directed RNA polymerase subunit alpha
L3_069_000G1_scaffold_699_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16213..16806)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=2 Tax=Clostridium RepID=B6FLG1_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S4P
L3_069_000G1_scaffold_699_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16823..17218)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=10 Tax=Clostridiales RepID=B0NFF4_CLOSV
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S11P
L3_069_000G1_scaffold_699_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17390..17758)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=2 Tax=Clostridium RepID=B6FLF9_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
30S ribosomal protein S13
L3_069_000G1_scaffold_699_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18292..18510)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Clostridium nexile CAG:348 RepID=R6QMW2_9CLOT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
translation initiation factor IF-1
L3_069_000G1_scaffold_699_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18513..18767)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23301.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_699_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18781..19536)
DNA (756bp) protein (252aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=2 Tax=Clostridium RepID=B6FLF5_9CLOT
L3_069_000G1_scaffold_699_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19542..20186)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=2 Tax=Clostridium RepID=B6FLF4_9CLOT
L3_069_000G1_scaffold_699_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20302..21657)
DNA (1356bp) protein (452aa)
Protein translocase subunit SecY n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLF3_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secY/sec61 alpha
L3_069_000G1_scaffold_699_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21657..22097)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLF2_9CLOT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L15P
L3_069_000G1_scaffold_699_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22121..22300)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Clostridium RepID=B6FLF1_9CLOT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L30P
L3_069_000G1_scaffold_699_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22315..22824)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Clostridium RepID=B6FLF0_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SSU ribosomal protein S5P
L3_069_000G1_scaffold_699_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22839..23207)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=2 Tax=Clostridium RepID=B6FLE9_9CLOT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
50S ribosomal protein L18
L3_069_000G1_scaffold_699_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23225..23767)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLE8_9CLOT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L6P
L3_069_000G1_scaffold_699_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23837..24238)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=2 Tax=Clostridium RepID=B6FLE7_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribosomal protein S8
L3_069_000G1_scaffold_699_26
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24351..24536)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=6 Tax=Clostridiales RepID=B6FLE6_9CLOT
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Ribosomal protein S14
L3_069_000G1_scaffold_699_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24554..25093)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLE5_9CLOT
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
rplE; 50S ribosomal protein L5
L3_069_000G1_scaffold_699_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25117..25428)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=2 Tax=Clostridium RepID=R6PXY6_9CLOT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L24P
L3_069_000G1_scaffold_699_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25443..25811)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=2 Tax=Clostridium RepID=B6FLE3_9CLOT
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rplN; 50S ribosomal protein L14
L3_069_000G1_scaffold_699_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25833..26087)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=2 Tax=Clostridium RepID=B6FLE2_9CLOT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
30S ribosomal protein S17
Displaying items 1-30 of 65 in total

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