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L3_069_000G1_scaffold_1056

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_1056_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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372..2639
DNA (2268bp) protein (756aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LU28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87169.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
alpha-rhamnosidase
L3_069_000G1_scaffold_1056_2
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2658..3941
DNA (1284bp) protein (428aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
M18 family aminopeptidase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QG41_9FIRM
aspartyl aminopeptidase
L3_069_000G1_scaffold_1056_3
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3954..6377)
DNA (2424bp) protein (808aa)
Protease {ECO:0000313|EMBL:AKB13831.1}; EC=3.4.-.- {ECO:0000313|EMBL:AKB13831.1};; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina thermophila TM-1.;"
Collagenase-like protease n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M3B9_CLOCD
collagenase-like protease
L3_069_000G1_scaffold_1056_4
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6367..6828)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z4B6_9CLOT
protein of unknown function DUF710
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_069_000G1_scaffold_1056_5
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6968..7597
DNA (630bp) protein (210aa)
Rubrerythrin n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C4A
rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:ADZ84678.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_069_000G1_scaffold_1056_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7993..9765
DNA (1773bp) protein (591aa)
Uncharacterized protein n=1 Tax=Clostridium thermocellum BC1 RepID=U4MMC6_CLOTM
fibronectin-binding A domain-containing protein
Fibronectin-binding A domain protein {ECO:0000313|EMBL:ABN51817.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_069_000G1_scaffold_1056_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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9762..10667
DNA (906bp) protein (302aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Pseudouridine synthase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQQ9_9FIRM
pseudouridine synthase
L3_069_000G1_scaffold_1056_8
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10612..11529)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AEU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83317.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
AraC family transcriptional regulator
L3_069_000G1_scaffold_1056_9
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11679..12719
DNA (1041bp) protein (347aa)
Glutamine--fructose-6-phosphate aminotransferase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R6E4_9CLOT
Glutamine--fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:EPR14068.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
glucosamine 6-phosphate synthetase
L3_069_000G1_scaffold_1056_10
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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12744..13589
DNA (846bp) protein (282aa)
DNA-binding transcriptional dual regulator id=4611795 bin=GWF2_Lentisphaerae_49_21 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
putative LmbE-like protein
Tax=GWF2_Lentisphaerae_49_21_curated
L3_069_000G1_scaffold_1056_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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13589..14965
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P168_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97760.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_069_000G1_scaffold_1056_12
unknown

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comp(14967..15185)
DNA (219bp) protein (73aa)

This feature has no annotations

L3_069_000G1_scaffold_1056_13
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(15187..16119)
DNA (933bp) protein (311aa)
Putative uncharacterized protein id=2752348 bin=GWF2_Clostridiales_36_10 species=Marvinbryantia formatexigens genus=Marvinbryantia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Clostridiales_36_10_curated
L3_069_000G1_scaffold_1056_14
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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16532..17197
DNA (666bp) protein (222aa)
RNA polymerase sigma factor n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXL9_THEOJ
RNA polymerase sigma-27/28 subunit RpsK/SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
L3_069_000G1_scaffold_1056_15
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17214..18977)
DNA (1764bp) protein (588aa)
Na+/phosphate symporter n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZYM3_9FIRM
Na+/phosphate symporter {ECO:0000313|EMBL:CDD53623.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Na+/phosphate symporter
L3_069_000G1_scaffold_1056_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19018..20715)
DNA (1698bp) protein (566aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
PAS domain S-box (EC:2.7.13.3)
PAS domain S-box protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M1U8_9FIRM
L3_069_000G1_scaffold_1056_17
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20718..21386)
DNA (669bp) protein (223aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KRE8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulator receiver domain protein {ECO:0000313|EMBL:CCY69373.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
L3_069_000G1_scaffold_1056_18
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(21429..22070)
DNA (642bp) protein (214aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AMH6_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
phoU; phosphate transport system protein PhoU
L3_069_000G1_scaffold_1056_19
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22070..22819)
DNA (750bp) protein (250aa)
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) n=5 Tax=Clostridiales RepID=D4MW61_9FIRM
L3_069_000G1_scaffold_1056_20
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(22826..23704)
DNA (879bp) protein (293aa)
Phosphate ABC transporter, inner membrane subunit PstA id=4584825 bin=GWF2_Clostridiales_38_85 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
Tax=GWF2_Clostridiales_38_85_curated
L3_069_000G1_scaffold_1056_21
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(23706..24554)
DNA (849bp) protein (283aa)
Phosphate ABC transporter permease PstC n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AF49_9FIRM
Phosphate ABC transporter permease PstC {ECO:0000313|EMBL:CCX40489.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L3_069_000G1_scaffold_1056_22
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(24660..25529)
DNA (870bp) protein (290aa)
Putative uncharacterized protein id=4129772 bin=GWF2_Clostridiales_36_10 species=Clostridium nexile genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
phosphate ABC transporter substrate-binding protein
Tax=GWF2_Clostridiales_36_10_curated
L3_069_000G1_scaffold_1056_23
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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25751..27058
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U1W2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC76059.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_069_000G1_scaffold_1056_24
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27559..28362)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WW33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX68607.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
ATPase family protein
L3_069_000G1_scaffold_1056_25
unknown

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28392..28502
DNA (111bp) protein (37aa)

This feature has no annotations

L3_069_000G1_scaffold_1056_26
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28615..29202)
DNA (588bp) protein (196aa)
Thiamine monophosphate synthase (EC:2.5.1.3)
Putative thiamine-phosphate diphosphorylase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMH7_9FIRM
Putative thiamine-phosphate diphosphorylase {ECO:0000313|EMBL:EDM89071.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_069_000G1_scaffold_1056_27
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29189..30406)
DNA (1218bp) protein (406aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Roseburia sp. CAG:197 RepID=R5YEI0_9FIRM
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:CDA25275.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
tyrosine lyase ThiH
L3_069_000G1_scaffold_1056_28
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30425..31204)
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Thiazole synthase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ENR4_9FIRM
thiazole-phosphate synthase
L3_069_000G1_scaffold_1056_29
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(31224..31859)
DNA (636bp) protein (212aa)
thiamine biosynthesis protein ThiF, family 2 (EC:2.7.7.-)
Thiamine biosynthesis protein ThiF n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6WK25_9FIRM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:CDC94497.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L3_069_000G1_scaffold_1056_30
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31862..32059)
DNA (198bp) protein (66aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Roseburia sp. CAG:182 RepID=R7QTK5_9FIRM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:CDF41444.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
thiamine biosynthesis protein ThiS
Displaying items 1-30 of 40 in total

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