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L3_069_000G1_scaffold_1760

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_1760_1
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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297..1025
DNA (729bp) protein (243aa)
transcriptional regulator n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D927
DNA-binding regulatory protein, YebC/PmpR family
Probable transcriptional regulatory protein Clocl_3994 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_069_000G1_scaffold_1760_2
Synergistes jonesii, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

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comp(1036..2070)
DNA (1035bp) protein (345aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=2754 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes jonesii.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBK6_9FIRM
L3_069_000G1_scaffold_1760_3
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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2205..4139
DNA (1935bp) protein (645aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI000301CA70
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AAU92942.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
L3_069_000G1_scaffold_1760_4
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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4161..6329
DNA (2169bp) protein (723aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6UWG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC75002.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L3_069_000G1_scaffold_1760_5
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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6390..7022
DNA (633bp) protein (211aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 id=4605232 bin=GWC2_Planctomycetes_45_44 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
HAD-superfamily hydrolase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
L3_069_000G1_scaffold_1760_6
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7027..7413
DNA (387bp) protein (129aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FVB3_9CLOT
holo-(acyl-carrier-protein) synthase
L3_069_000G1_scaffold_1760_7
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7418..8095)
DNA (678bp) protein (226aa)
PspA/IM30 family protein n=7 Tax=Clostridium thermocellum RepID=A3DI31_CLOTH
PspA/IM30 family protein
PspA/IM30 family protein {ECO:0000313|EMBL:ABN53610.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_069_000G1_scaffold_1760_8
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8210..8710
DNA (501bp) protein (167aa)
Large-conductance mechanosensitive channel n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VNU5_CLOSH
lconductance channel protein
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_069_000G1_scaffold_1760_9
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(8705..10066)
DNA (1362bp) protein (454aa)
phosphohydrolase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B2F4D9
Uncharacterized protein {ECO:0000313|EMBL:ESL15571.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
metal dependent phosphohydrolase
L3_069_000G1_scaffold_1760_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10038..11276)
DNA (1239bp) protein (413aa)
Aminotransferase class-III n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W602_9FIRM
Aminotransferase class-III {ECO:0000313|EMBL:CDD04905.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
aminotransferase class-III
L3_069_000G1_scaffold_1760_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11298..12056)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PJX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10042.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_069_000G1_scaffold_1760_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12053..12712)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAS2_THETN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY85026.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_069_000G1_scaffold_1760_13
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12716..14554)
DNA (1839bp) protein (613aa)
GTPase HflX n=4 Tax=Clostridium thermocellum RepID=E6US34_CLOTL
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_069_000G1_scaffold_1760_14
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14571..15251)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JI92_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY65806.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L3_069_000G1_scaffold_1760_15
Streptococcus sinensis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15265..16314)
DNA (1050bp) protein (350aa)
GtrA-like protein n=1 Tax=Streptococcus infantis X RepID=F9PBZ8_9STRE
Uncharacterized protein {ECO:0000313|EMBL:KGM37354.1}; TaxID=176090 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sinensis.;"
glycosyltransferase
L3_069_000G1_scaffold_1760_16
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(16307..17257)
DNA (951bp) protein (317aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN
L3_069_000G1_scaffold_1760_17
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17245..18264)
DNA (1020bp) protein (340aa)
Exopolyphosphatase-like protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FRL5_9CLOT
Exopolyphosphatase-like protein {ECO:0000313|EMBL:EMS72991.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
phosphoesterase RecJ domain-containing protein
L3_069_000G1_scaffold_1760_18
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18292..18636)
DNA (345bp) protein (115aa)
Ribosome-binding factor A n=2 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=M4Y6A7_CLOSH
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_069_000G1_scaffold_1760_19
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18623..21622)
DNA (3000bp) protein (1000aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZT8_CLOCD
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_069_000G1_scaffold_1760_20
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21615..21923)
DNA (309bp) protein (103aa)
Uncharacterized protein n=7 Tax=Clostridium thermocellum RepID=E6UPA5_CLOTL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52225.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_069_000G1_scaffold_1760_21
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21944..23134)
DNA (1191bp) protein (397aa)
Transcription termination factor NusA n=7 Tax=Clostridium thermocellum RepID=A3DE47_CLOTH
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_069_000G1_scaffold_1760_22
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23157..23618)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TM58_THETC
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
L3_069_000G1_scaffold_1760_23
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23737..24399)
DNA (663bp) protein (221aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 (EC:3.1.3.5)
5'-nucleotidase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CDC7_9CLOT
5'-nucleotidase {ECO:0000313|EMBL:ERI67242.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L3_069_000G1_scaffold_1760_24
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24396..26129)
DNA (1734bp) protein (578aa)
AMP-dependent synthetase and ligase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TG86_9CLOT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EGD46705.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
acyl-CoA synthetase/AMP-acid ligase
Displaying 24 items

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