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L3_069_000G1_scaffold_576

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_576_1
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(298..1749)
DNA (1452bp) protein (484aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KVQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34284.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L3_069_000G1_scaffold_576_2
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2064..3248)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
Probable tRNA sulfurtransferase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TA57_9CLOT
thiazole biosynthesis/tRNA modification protein ThiI
L3_069_000G1_scaffold_576_3
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3270..5102)
DNA (1833bp) protein (611aa)
Aminotransferase class V n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TA56_9CLOT
Aminotransferase class V {ECO:0000313|EMBL:EGD48798.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
class V aminotransferase
L3_069_000G1_scaffold_576_4
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5143..5703)
DNA (561bp) protein (187aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTC5_CLOCD
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_069_000G1_scaffold_576_5
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5737..5964)
DNA (228bp) protein (76aa)
UPF0109 protein Awo_c21160 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LBD7_ACEWD
putative nucleic acid binding protein
UPF0109 protein Awo_c21160 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_069_000G1_scaffold_576_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5988..6236)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=3 Tax=Clostridiales RepID=G9YNL4_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
30S ribosomal protein S16
L3_069_000G1_scaffold_576_7
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6272..7618)
DNA (1347bp) protein (449aa)
Signal recognition particle protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VRK9_CLOSH
signal recognition particle
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_069_000G1_scaffold_576_8
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7629..8030)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FPI6_9CLOT
UPF0122 protein CTER_3159 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L3_069_000G1_scaffold_576_9
CG_Elusi_03, Elusimicrobia, Bacteria

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comp(8211..10247)
DNA (2037bp) protein (679aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002E1CA35
hypothetical protein
Tax=CG_Elusi_03
L3_069_000G1_scaffold_576_10
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10579..10983
DNA (405bp) protein (135aa)
Uncharacterized conserved protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GTK5_9FIRM
hypothetical protein
Dinitrogenase iron-molybdenum cofactor {ECO:0000313|EMBL:CDD55908.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L3_069_000G1_scaffold_576_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(11260..12309)
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZN9_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93517.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
L3_069_000G1_scaffold_576_12
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12461..13405)
DNA (945bp) protein (315aa)
Putative diguanylate cyclase AdrA {ECO:0000313|EMBL:KJJ68597.1}; EC=2.7.7.65 {ECO:0000313|EMBL:KJJ68597.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMR5_9CLOT
signaling protein
L3_069_000G1_scaffold_576_13
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14744..14926
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U724_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ51014.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_069_000G1_scaffold_576_14
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14940..15185
DNA (246bp) protein (82aa)
Coat F domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTY0_9CLOT
Coat F domain protein {ECO:0000313|EMBL:EEG57454.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Coat F domain-containing protein
L3_069_000G1_scaffold_576_15
unknown

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comp(15416..15763)
DNA (348bp) protein (116aa)

This feature has no annotations

L3_069_000G1_scaffold_576_16
R_OP11_Roizmanbacteria_39_24, Roizmannbacteria, Microgenomates, Bacteria

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comp(15760..17358)
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P5C5_9FIRM
Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_24_curated
L3_069_000G1_scaffold_576_17
Oribacterium asaccharolyticum, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17371..21591)
DNA (4221bp) protein (1407aa)
Putative uncharacterized protein n=1 Tax=Oribacterium sp. ACB7 RepID=G9WV74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL11475.1}; TaxID=796944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium asaccharolyticum ACB7.;"
von Willebrand factor, type A
L3_069_000G1_scaffold_576_18
Bacillus sp. NRRL B-14911, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(22059..22955)
DNA (897bp) protein (299aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Turicibacter sp. HGF1 RepID=F0HCG2_9FIRM
Predicted dehydrogenase short-chain alcohol dehydrogenase family protein {ECO:0000313|EMBL:EAR67589.1}; TaxID=313627 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. NRRL B-14911.;"
dehydrogenase
L3_069_000G1_scaffold_576_19
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23082..23750)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MIG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF00410.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
manganese-containing catalase
L3_069_000G1_scaffold_576_20
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24049..25473)
DNA (1425bp) protein (475aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PTT2_9FIRM
L3_069_000G1_scaffold_576_21
unknown

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comp(25789..26031)
DNA (243bp) protein (81aa)

This feature has no annotations

L3_069_000G1_scaffold_576_22
unknown

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26369..26704
DNA (336bp) protein (112aa)

This feature has no annotations

L3_069_000G1_scaffold_576_23
unknown

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26786..26920
DNA (135bp) protein (45aa)

This feature has no annotations

L3_069_000G1_scaffold_576_24
Leptotrichia sp. oral taxon 215, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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27058..27258
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Leptotrichia sp. oral taxon 215 str. W9775 RepID=U2QRW5_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:ERK65680.1}; TaxID=1321779 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 215 str. W9775.;"
transcriptional regulator
L3_069_000G1_scaffold_576_25
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27268..27939
DNA (672bp) protein (224aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DLH9_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDA89378.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
ompR; winged helix family two component transcriptional regulator
L3_069_000G1_scaffold_576_26
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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28012..28551
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AHZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF40722.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_069_000G1_scaffold_576_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28585..29574
DNA (990bp) protein (330aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NJL7_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDC11415.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Two component sensor histidine kinase
L3_069_000G1_scaffold_576_28
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29685..30449
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42663.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
antimicrobial peptide ABC transporter ATPase
L3_069_000G1_scaffold_576_29
Candidatus Arthromitus sp. SFB-rat-Yit, Candidatus Arthromitus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30446..32485
DNA (2040bp) protein (680aa)
Uncharacterized protein n=8 Tax=Candidatus Arthromitus RepID=H7D822_9CLOT
ABC transporter permease protein
Putative ABC transporter, permease protein {ECO:0000313|EMBL:BAK81503.1}; TaxID=1041504 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Candidatus Arthromitus.;" source="Candidatus Arthromitus sp. SFB-rat-Yit.;"
L3_069_000G1_scaffold_576_30
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32654..33913)
DNA (1260bp) protein (420aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
enolase (EC:4.2.1.11)
enolase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000370C655
Displaying items 1-30 of 64 in total

View Taxonomy