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L3_069_000G1_scaffold_993

Search features with annotation key words

Displaying items 1-30 of 42 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_993_1
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(172..1794)
DNA (1623bp) protein (541aa)
60 kDa chaperonin n=2 Tax=Clostridium RepID=S0FH84_9CLOT
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
chaperonin GroEL
L3_069_000G1_scaffold_993_2
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1813..2097)
DNA (285bp) protein (95aa)
co-chaperonin GroES n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BE67
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000255|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000255|HAMAP-Rule:MF_00580}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_069_000G1_scaffold_993_3
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2300..4591)
DNA (2292bp) protein (764aa)
pcrA; PcrA (EC:3.6.4.12)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
ATP-dependent DNA helicase PcrA n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EBD3
L3_069_000G1_scaffold_993_4
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(4575..5339)
DNA (765bp) protein (255aa)
tRNA/rRNA methyltransferase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NMY3_9FIRM
tRNA/rRNA methyltransferase {ECO:0000313|EMBL:EGO62594.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
rRNA methylase, putative, group 3
L3_069_000G1_scaffold_993_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5332..5703)
DNA (372bp) protein (124aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Mini-ribonuclease 3 n=2 Tax=Clostridiales RepID=B0A688_9FIRM
ribonuclease III
L3_069_000G1_scaffold_993_6
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5747..8287)
DNA (2541bp) protein (847aa)
Copper amine oxidase domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TLR7_ALKMQ
copper amine oxidase domain-containing protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
L3_069_000G1_scaffold_993_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8284..10014)
DNA (1731bp) protein (577aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
prolyl-tRNA synthetase, family II (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCJ3_9CLOT
L3_069_000G1_scaffold_993_8
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

comp(10108..11298)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002D3FAA5
Uncharacterized protein {ECO:0000313|EMBL:EDM25904.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
L3_069_000G1_scaffold_993_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11502..12362)
DNA (861bp) protein (287aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9Q4_9CLOT
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEG31819.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
family 3 extracellular solute-binding protein
L3_069_000G1_scaffold_993_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12727..14847)
DNA (2121bp) protein (707aa)
Alanine racemase n=1 Tax=Clostridium difficile Y165 RepID=T4CZK7_CLODI
Racemase {ECO:0000313|EMBL:BAO94342.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
vanTG; serine/alanine racemase
L3_069_000G1_scaffold_993_11
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14850..15902)
DNA (1053bp) protein (351aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Clostridium difficile CD160 RepID=T3DM93_CLODI
Tax=BJP_IG2157_Clostridiales_35_16
L3_069_000G1_scaffold_993_12
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16055..17167)
DNA (1113bp) protein (371aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8Y0_9FIRM
two-component sensor histidine kinase
L3_069_000G1_scaffold_993_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17157..17858)
DNA (702bp) protein (234aa)
Response regulator n=177 Tax=Clostridium difficile RepID=T3H6Q8_CLODC
vanR; two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ68489.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_000G1_scaffold_993_14
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17885..19435)
DNA (1551bp) protein (517aa)
Metallophosphoesterase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SFV3_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KHF33606.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P1XP2.;"
hypothetical protein
L3_069_000G1_scaffold_993_15
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19432..20403)
DNA (972bp) protein (324aa)
Putative membrane protein n=5 Tax=Lactobacillus casei group RepID=K6RS14_LACCA
Membrane protein {ECO:0000313|EMBL:KGP69090.1}; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
hypothetical protein
L3_069_000G1_scaffold_993_16
unknown

Not on your lists

20470..21000
DNA (531bp) protein (177aa)

This feature has no annotations

L3_069_000G1_scaffold_993_17
Thermoactinomyces sp. Gus2-1, Thermoactinomyces, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21010..22473)
DNA (1464bp) protein (488aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485};; TaxID=1535750 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Thermoactinomyces.;" source="Thermoactinomyces sp. Gus2-1.;"
yqjI; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase-like protein n=1 Tax=Paenibacillus larvae RepID=UPI000169526F
L3_069_000G1_scaffold_993_18
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22505..24241)
DNA (1737bp) protein (579aa)
AMP-dependent synthetase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R206_9CLOT
Long-chain-fatty-acid-CoA ligase {ECO:0000313|EMBL:GAE90182.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
AMP-forming long-chain acyl-CoA synthetase
L3_069_000G1_scaffold_993_19
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24267..25073)
DNA (807bp) protein (269aa)
Xylose isomerase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QYP8_9CLOT
Xylose isomerase {ECO:0000313|EMBL:EPR08273.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
sugar phosphate isomerase/epimerase
L3_069_000G1_scaffold_993_20
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25079..25921)
DNA (843bp) protein (281aa)
IlvE2 {ECO:0000313|EMBL:EDK34147.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EDK34147.1};; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
IlvE2 n=2 Tax=Clostridium kluyveri RepID=A5MZ51_CLOK5
hypothetical protein
L3_069_000G1_scaffold_993_21
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25908..27179)
DNA (1272bp) protein (424aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000255|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000255|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000255|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000255|HAMAP-Rule:MF_01281};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=7 Tax=Clostridium thermocellum RepID=MTAD_CLOTH
amidohydrolase
L3_069_000G1_scaffold_993_22
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27213..28211)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I6J9_CLOCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL74891.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_069_000G1_scaffold_993_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28195..30081)
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D7Z9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI77597.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_069_000G1_scaffold_993_24
unknown

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comp(30053..30259)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_069_000G1_scaffold_993_25
unknown

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comp(30359..30748)
DNA (390bp) protein (130aa)

This feature has no annotations

L3_069_000G1_scaffold_993_26
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30750..31418)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Desulfotomaculum RepID=F0DI75_9FIRM
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEF93840.1}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
L3_069_000G1_scaffold_993_27
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31519..31731
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Bacillus sp. L1(2012) RepID=UPI00034DB05A
Uncharacterized protein {ECO:0000313|EMBL:KJF28775.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
hypothetical protein
L3_069_000G1_scaffold_993_28
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31744..32013
DNA (270bp) protein (90aa)
Coat F domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TLQ8_ALKMQ
coat F domain-containing protein
Coat F domain protein {ECO:0000313|EMBL:ABR47126.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
L3_069_000G1_scaffold_993_29
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(32144..34786)
DNA (2643bp) protein (881aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BLD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD65938.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_069_000G1_scaffold_993_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34969..35655
DNA (687bp) protein (229aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6R432_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDR99450.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Displaying items 1-30 of 42 in total

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