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L3_069_000M1_scaffold_1603

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_1603_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..339)
DNA (339bp) protein (113aa)
NAD+ synthase {ECO:0000313|EMBL:EFB76583.1}; EC=6.3.1.5 {ECO:0000313|EMBL:EFB76583.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS5_9FIRM
L3_069_000M1_scaffold_1603_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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511..708
DNA (198bp) protein (66aa)
DNA-binding helix-turn-helix protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8E3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEU95648.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted transcriptional regulators
L3_069_000M1_scaffold_1603_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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712..1188
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K9C9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01442.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_069_000M1_scaffold_1603_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1175..2155
DNA (981bp) protein (327aa)
CAAX amino terminal protease family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS8_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFB76586.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CAAX amino terminal protease family.
L3_069_000M1_scaffold_1603_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2212..2667)
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS9_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB76587.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartokinases
L3_069_000M1_scaffold_1603_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2685..3917)
DNA (1233bp) protein (411aa)
Bacterial capsule synthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT0_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFB76588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L3_069_000M1_scaffold_1603_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3908..4675)
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT1_9FIRM
L3_069_000M1_scaffold_1603_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4755..5645)
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT2_9FIRM
L3_069_000M1_scaffold_1603_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5685..6761)
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFB76591.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EFB76591.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT3_9FIRM
L3_069_000M1_scaffold_1603_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7133..8161
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT5_9FIRM
L3_069_000M1_scaffold_1603_11
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8233..9132
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NFJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS81893.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
helix-turn-helix type 11 domain-containing protein
L3_069_000M1_scaffold_1603_12
Streptococcus sanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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9187..9789
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Streptococcus mutans LJ23 RepID=U3SS19_STRMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ39560.1}; TaxID=888820 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sanguinis SK1056.;"
L3_069_000M1_scaffold_1603_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9936..11069
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT7_9FIRM
L3_069_000M1_scaffold_1603_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11151..11501
DNA (351bp) protein (117aa)
Preprotein translocase, YajC subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT8_9FIRM
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFB76596.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, YajC subunit
L3_069_000M1_scaffold_1603_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11560..11967
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76597.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_1603_16
unknown

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11967..12623
DNA (657bp) protein (219aa)

This feature has no annotations

L3_069_000M1_scaffold_1603_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12558..13634)
DNA (1077bp) protein (359aa)
Phage integrase SAM-like domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU1_9FIRM
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFB76599.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Site-specific recombinase XerD
L3_069_000M1_scaffold_1603_18
unknown

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14119..14328
DNA (210bp) protein (70aa)

This feature has no annotations

L3_069_000M1_scaffold_1603_19
unknown

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14340..14618
DNA (279bp) protein (93aa)

This feature has no annotations

L3_069_000M1_scaffold_1603_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14666..15595)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76604.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_1603_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15592..16476)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76605.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_1603_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16488..17843)
DNA (1356bp) protein (452aa)
DNA repair protein radA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU8_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA repair protein RadA
L3_069_000M1_scaffold_1603_23

Not on your lists

comp(17999..18688)
DNA (690bp) protein (230aa)
VanZ like protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TZD1_9ZZZZ
VanZ like protein {ECO:0000313|EMBL:EKC78432.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
vanZ; teicoplanin resistance protein
L3_069_000M1_scaffold_1603_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18819..20039)
DNA (1221bp) protein (407aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU9_9FIRM
L3_069_000M1_scaffold_1603_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20435..22102)
DNA (1668bp) protein (556aa)
DNA repair protein RecN n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV0_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA replication and repair protein RecN
L3_069_000M1_scaffold_1603_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22129..22590)
DNA (462bp) protein (154aa)
Arginine repressor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV1_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Arginine repressor
L3_069_000M1_scaffold_1603_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22596..23450)
DNA (855bp) protein (285aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV2_9FIRM
L3_069_000M1_scaffold_1603_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23468..24289)
DNA (822bp) protein (274aa)
Putative ribosomal RNA large subunit methyltransferase J n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV3_9FIRM
Putative ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:EFB76611.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hemolysin A
L3_069_000M1_scaffold_1603_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24286..26163)
DNA (1878bp) protein (626aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV4_9FIRM
L3_069_000M1_scaffold_1603_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26179..26646)
DNA (468bp) protein (156aa)
Divergent PAP2 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKV5_9FIRM
Divergent PAP2 family {ECO:0000313|EMBL:EFB76613.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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