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L3_069_000M1_scaffold_112

Search features with annotation key words

Displaying items 1-30 of 175 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_112_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1614)
DNA (1614bp) protein (538aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable phosphoketolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQW1_BIFBS
xylulose-5-phosphate/Fructose-6-phosphate phosphoketolase
L3_069_000M1_scaffold_112_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2143..3705
DNA (1563bp) protein (521aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
GMP synthase [glutamine-hydrolyzing] n=2 Tax=Bifidobacterium RepID=E4P182_BIFBP
L3_069_000M1_scaffold_112_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4037..4582
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DLQ1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82472.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_069_000M1_scaffold_112_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5950..8256
DNA (2307bp) protein (769aa)
phosphate acetyltransferase n=1 Tax=Bifidobacterium bifidum RepID=UPI00035EE886
Phosphate acetyltransferase {ECO:0000313|EMBL:ADO52994.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
pta; phosphate acetyltransferase
L3_069_000M1_scaffold_112_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8538..9767
DNA (1230bp) protein (410aa)
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Acetate kinase n=6 Tax=Bifidobacterium RepID=I3WHI4_BIFBI
L3_069_000M1_scaffold_112_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9881..11443)
DNA (1563bp) protein (521aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEM7_BIFBI
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase
L3_069_000M1_scaffold_112_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11445..12050
DNA (606bp) protein (202aa)
Peptidase E {ECO:0000313|EMBL:KFI42827.1}; EC=3.4.13.21 {ECO:0000313|EMBL:KFI42827.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Peptidase E n=5 Tax=Bifidobacterium RepID=E3EQU9_BIFBS
putative peptidase
L3_069_000M1_scaffold_112_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12528..13340
DNA (813bp) protein (271aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V955_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42826.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_000M1_scaffold_112_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13497..14189
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V953_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50145.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_069_000M1_scaffold_112_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14284..14832)
DNA (549bp) protein (183aa)
Intracellular protease, PfpI family n=2 Tax=Bifidobacterium bifidum RepID=E4V952_BIFBI
Intracellular protease, PfpI family {ECO:0000313|EMBL:ERI82482.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97967.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ThiJ/PfpI domain-containing protein
L3_069_000M1_scaffold_112_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14958..15818)
DNA (861bp) protein (287aa)
Organophosphate reductase {ECO:0000313|EMBL:KFI42823.1}; EC=1.1.1.218 {ECO:0000313|EMBL:KFI42823.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
aldo/keto reductase family (EC:1.1.1.64)
Organophosphate reductase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEN0_BIFBI
L3_069_000M1_scaffold_112_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15984..16400
DNA (417bp) protein (139aa)
Putative HTH-type transcriptional regulator AdhR n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BWA2_BIFBI
Putative HTH-type transcriptional regulator AdhR {ECO:0000313|EMBL:KFI42822.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Predicted transcriptional regulators
L3_069_000M1_scaffold_112_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16500..16937
DNA (438bp) protein (146aa)
Transcriptional regulator, MarR family n=2 Tax=Bifidobacterium bifidum RepID=E4V949_BIFBI
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KFI42821.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative transcription regulator
L3_069_000M1_scaffold_112_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17054..17269
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRW2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42820.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter
L3_069_000M1_scaffold_112_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17497..17736
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DLR5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82487.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
acetyltransferase, GNAT family
L3_069_000M1_scaffold_112_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17785..18063
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V947_BIFBI
Acetyltransferase {ECO:0000313|EMBL:KFI42818.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_000M1_scaffold_112_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18373..18540)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V946_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82490.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_069_000M1_scaffold_112_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19335..20552
DNA (1218bp) protein (406aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU7_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52989.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_112_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20628..22799)
DNA (2172bp) protein (724aa)
glgX; glycogen operon protein GlgX (EC:3.2.1.68)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Glycogen operon protein glgX n=4 Tax=Bifidobacterium RepID=E3EQU6_BIFBS
L3_069_000M1_scaffold_112_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22864..23562)
DNA (699bp) protein (233aa)
Phosphohydrolase, MutT/nudix family n=2 Tax=Bifidobacterium bifidum RepID=E3EQU5_BIFBS
phosphohydrolase
Phosphohydrolase {ECO:0000313|EMBL:EKF15739.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000M1_scaffold_112_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23616..24533)
DNA (918bp) protein (306aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHH7_BIFBI
hypothetical protein
L3_069_000M1_scaffold_112_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24591..27425)
DNA (2835bp) protein (945aa)
polA; DNA polymerase I (EC:2.7.7.7)
PolA DNA polymerase I n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLX0_9BIFI
PolA DNA polymerase I {ECO:0000313|EMBL:CDB22261.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_112_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27422..28198)
DNA (777bp) protein (259aa)
Transcriptional regulator n=8 Tax=Bifidobacterium RepID=E3EQU2_BIFBS
amiR; putative two-component system responseregulator
Transcriptional regulator {ECO:0000313|EMBL:ADO52984.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_112_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28606..29205
DNA (600bp) protein (200aa)
Hydrolase, NUDIX family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DS14_BIFBI
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERI84392.1}; Putative NTP pyrophosphatase {ECO:0000313|EMBL:BAQ97953.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ADP-ribose pyrophosphatase
L3_069_000M1_scaffold_112_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29414..30856)
DNA (1443bp) protein (481aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Pyruvate kinase n=7 Tax=Bifidobacterium RepID=E3EQU0_BIFBS
pyk; Pyruvate kinase
L3_069_000M1_scaffold_112_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30998..31999)
DNA (1002bp) protein (334aa)
TerC Tellurium resistance protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P165_BIFBP
terC; tellurium resistance protein
TerC Tellurium resistance protein {ECO:0000313|EMBL:CDB22257.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_112_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32035..34146)
DNA (2112bp) protein (704aa)
UvrABC system protein B n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5L2_BIFBI
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
uvrB; excinuclease ABC subunit B
L3_069_000M1_scaffold_112_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34325..34933)
DNA (609bp) protein (203aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V935_BIFBI
L3_069_000M1_scaffold_112_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(35258..36730)
DNA (1473bp) protein (491aa)
rpsA; 30S ribosomal protein S1 (EC:1.17.1.2)
30S ribosomal protein S1 n=3 Tax=Bifidobacterium bifidum RepID=E4P162_BIFBP
30S ribosomal protein S1 {ECO:0000313|EMBL:AFL04332.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_112_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36878..37753)
DNA (876bp) protein (292aa)
folD; 5, 10-methylene-tetrahydrofolatedehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=5 Tax=Bifidobacterium bifidum RepID=I3WHG8_BIFBI
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Displaying items 1-30 of 175 in total

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