ggKbase home page

L3_069_000M1_scaffold_177

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_177_1
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(73..462)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Acidaminococcus intestini (strain RyC-MR95) RepID=G4Q6U7_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22246.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_2
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1248..2204
DNA (957bp) protein (319aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
Aspartate carbamoyltransferase n=4 Tax=Acidaminococcus RepID=G4Q6U9_ACIIR
L3_069_000M1_scaffold_177_3
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2188..3480
DNA (1293bp) protein (431aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Dihydroorotase n=3 Tax=Acidaminococcus RepID=G4Q6V0_ACIIR
L3_069_000M1_scaffold_177_4
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3468..4547
DNA (1080bp) protein (360aa)
carA; carbamoyl-phosphate synthase (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Acidaminococcus RepID=G4Q6V1_ACIIR
L3_069_000M1_scaffold_177_5
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

4550..7756
DNA (3207bp) protein (1069aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
carB; carbamoyl-phosphate synthase (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=4 Tax=Acidaminococcus RepID=G4Q6V2_ACIIR
L3_069_000M1_scaffold_177_6
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7760..8527
DNA (768bp) protein (256aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=5 Tax=Acidaminococcus RepID=G4Q6V3_ACIIR
dihydroorotate dehydrogenase electron transfer subunit
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_7
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8521..9447
DNA (927bp) protein (309aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Dihydroorotate dehydrogenase n=4 Tax=Acidaminococcus RepID=G4Q6V4_ACIIR
L3_069_000M1_scaffold_177_8
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9461..10189
DNA (729bp) protein (243aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=2 Tax=Acidaminococcus RepID=C0WCP4_9FIRM
L3_069_000M1_scaffold_177_9
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

10182..10754
DNA (573bp) protein (191aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=3 Tax=Acidaminococcus RepID=R6MHC5_9FIRM
L3_069_000M1_scaffold_177_10
unknown

Not on your lists

11086..11244
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Acidaminococcus sp. HPA0509 RepID=S2ZC52_9FIRM
L3_069_000M1_scaffold_177_11
Acidaminococcus sp. D21, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11532..12974
DNA (1443bp) protein (481aa)
ldcC; orn/lys/arg decarboxylase (EC:4.1.1.18)
Orn/lys/arg decarboxylase n=4 Tax=Acidaminococcus RepID=G4Q6V7_ACIIR
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:EEH90874.1}; TaxID=563191 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. D21.;"
L3_069_000M1_scaffold_177_12
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12971..13588
DNA (618bp) protein (206aa)
tmk; thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Thymidylate kinase n=5 Tax=Acidaminococcus RepID=G4Q6V8_ACIIR
L3_069_000M1_scaffold_177_13
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13637..14617
DNA (981bp) protein (327aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III delta' subunit n=4 Tax=Acidaminococcus RepID=G4Q6V9_ACIIR
DNA polymerase III delta' subunit {ECO:0000313|EMBL:AEQ22258.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_14
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14623..15468
DNA (846bp) protein (282aa)
Uncharacterized protein n=3 Tax=Acidaminococcus RepID=G4Q6W0_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22259.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_15
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15461..16189
DNA (729bp) protein (243aa)
Methyltransferase n=4 Tax=Acidaminococcus RepID=G4Q6W1_ACIIR
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AEQ22260.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_16
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16182..17027
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
Ribosomal RNA small subunit methyltransferase I n=4 Tax=Acidaminococcus RepID=C0WCN7_9FIRM
uroporphyrin-III C/tetrapyrrole methyltransferase
L3_069_000M1_scaffold_177_17
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


17020..18954
DNA (1935bp) protein (645aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=4 Tax=Acidaminococcus RepID=G4Q6W3_ACIIR
L3_069_000M1_scaffold_177_18
Acidaminococcus sp. D21, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18954..19739
DNA (786bp) protein (262aa)
Hydrolase n=4 Tax=Acidaminococcus RepID=G4Q6W4_ACIIR
hydrolase
Hydrolase, TatD family {ECO:0000313|EMBL:EEH90867.1}; TaxID=563191 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. D21.;"
L3_069_000M1_scaffold_177_19
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19887..20870
DNA (984bp) protein (328aa)
Uncharacterized protein n=5 Tax=Acidaminococcus RepID=G4Q6W5_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22264.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_20
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21004..21549
DNA (546bp) protein (182aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Ribonuclease M5 n=3 Tax=Acidaminococcus RepID=G4Q6W6_ACIIR
hypothetical protein
L3_069_000M1_scaffold_177_21
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


21564..22409
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Ribosomal RNA small subunit methyltransferase A n=4 Tax=Acidaminococcus RepID=G4Q6W7_ACIIR
dimethyladenosine transferase
L3_069_000M1_scaffold_177_22
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22406..22654
DNA (249bp) protein (83aa)
Uncharacterized protein n=4 Tax=Acidaminococcus RepID=G4Q6W8_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22267.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_23
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23543..23836
DNA (294bp) protein (98aa)
10 kDa chaperonin n=5 Tax=Acidaminococcus RepID=G4Q6W9_ACIIR
co-chaperonin groES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L3_069_000M1_scaffold_177_24
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23901..25529
DNA (1629bp) protein (543aa)
60 kDa chaperonin n=4 Tax=Acidaminococcus RepID=G4Q6X0_ACIIR
chaperonin groEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
L3_069_000M1_scaffold_177_25
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25651..26829)
DNA (1179bp) protein (393aa)
Integrase n=4 Tax=Megasphaera RepID=S7J6L1_9FIRM
Integrase {ECO:0000313|EMBL:EPP17855.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
integrase
L3_069_000M1_scaffold_177_26
Veillonella sp. 6_1_27, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26873..27415)
DNA (543bp) protein (181aa)
Hypothetical membrane-spanning protein n=1 Tax=Veillonella sp. 6_1_27 RepID=D6KPB2_9FIRM
Hypothetical membrane-spanning protein {ECO:0000313|EMBL:EFG25939.2}; TaxID=450749 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. 6_1_27.;"
hypothetical protein
L3_069_000M1_scaffold_177_27
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27429..28031)
DNA (603bp) protein (201aa)
LexA repressor family protein n=2 Tax=Megasphaera RepID=S7HQG8_9FIRM
LexA repressor family protein {ECO:0000313|EMBL:EPP17853.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
lexA repressor family protein
L3_069_000M1_scaffold_177_28
Bacillus wakoensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28182..28391
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Virgibacillus halodenitrificans RepID=UPI00030E910A
Transcriptional regulator {ECO:0000313|EMBL:GAE26994.1}; TaxID=1236970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus wakoensis JCM 9140.;"
helix-turn-helix
L3_069_000M1_scaffold_177_29
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28448..28702
DNA (255bp) protein (85aa)
Prophage LambdaCh01 DNA binding domain excisionase family n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MYL9_9FIRM
Prophage LambdaCh01 DNA binding domain excisionase family {ECO:0000313|EMBL:CDF04918.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_069_000M1_scaffold_177_30
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28699..28989
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Acidaminococcus intestini (strain RyC-MR95) RepID=G4Q400_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ23066.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Displaying items 1-30 of 120 in total

View Taxonomy