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L3_069_000M1_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_194_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(90..1463)
DNA (1374bp) protein (458aa)
Na+/H+-dicarboxylate symporters n=2 Tax=root RepID=D4L6G5_9FIRM
Na+/H+-dicarboxylate symporters
Na+/H+-dicarboxylate symporters {ECO:0000313|EMBL:CBL15210.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1867..2619)
DNA (753bp) protein (251aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6G4_9FIRM
Transcriptional regulators of sugar metabolism
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CBL15209.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2761..3753)
DNA (993bp) protein (331aa)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DST5_9FIRM
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) {ECO:0000313|EMBL:CCX83253.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3848..4819)
DNA (972bp) protein (324aa)
Sugar kinases, ribokinase family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6G2_9FIRM
Sugar kinases, ribokinase family
Sugar kinases ribokinase family {ECO:0000313|EMBL:CCX83254.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4821..5660)
DNA (840bp) protein (280aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:CBL15206.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CBL15206.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Fructose-bisphosphate aldolase n=3 Tax=root RepID=D4L6G1_9FIRM
L3_069_000M1_scaffold_194_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5706..6761)
DNA (1056bp) protein (352aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6G0_9FIRM
Threonine dehydrogenase and related Zn-dependent dehydrogenases
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:CBL15205.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7019..8407)
DNA (1389bp) protein (463aa)
Sugar phosphate permease n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3A2_9FIRM
Sugar phosphate permease
Sugar phosphate permease {ECO:0000313|EMBL:CCX83262.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8450..9151)
DNA (702bp) protein (234aa)
Pentose-5-phosphate-3-epimerase n=3 Tax=root RepID=D4L6F8_9FIRM
Pentose-5-phosphate-3-epimerase
Pentose-5-phosphate-3-epimerase {ECO:0000313|EMBL:CCX83265.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9185..10285)
DNA (1101bp) protein (367aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases n=2 Tax=Ruminococcus RepID=D4L6F7_9FIRM
Threonine dehydrogenase and related Zn-dependent dehydrogenases
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:CBL15202.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11017..13710)
DNA (2694bp) protein (898aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E523_9FIRM
L3_069_000M1_scaffold_194_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13919..14296
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6F5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15200.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14420..14758)
DNA (339bp) protein (113aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DSN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15199.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14873..15049
DNA (177bp) protein (59aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E3B6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15198.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15146..15700)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83279.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15929..17464
DNA (1536bp) protein (512aa)
Glycosidases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6F2_9FIRM
Glycosidases {ECO:0000313|EMBL:CBL15197.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glycosidases
L3_069_000M1_scaffold_194_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17542..18036)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6F1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15196.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18047..19501)
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6F0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15195.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_194_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19678..20034
DNA (357bp) protein (119aa)
Helix-turn-helix n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWI2_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CCX83284.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Helix-turn-helix.
L3_069_000M1_scaffold_194_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20155..21297)
DNA (1143bp) protein (381aa)
Prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E538_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CCX83286.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21305..22375)
DNA (1071bp) protein (357aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Chorismate synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6E7_9FIRM
L3_069_000M1_scaffold_194_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22356..23654)
DNA (1299bp) protein (433aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6E6_9FIRM
L3_069_000M1_scaffold_194_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23691..24740)
DNA (1050bp) protein (350aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-dehydroquinate synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6E5_9FIRM
L3_069_000M1_scaffold_194_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24759..25589)
DNA (831bp) protein (277aa)
Prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3C6_9FIRM
Prephenate dehydrogenase {ECO:0000313|EMBL:CCX83292.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25678..26694)
DNA (1017bp) protein (339aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=2 Tax=Ruminococcus RepID=D4L6E4_9FIRM
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase {ECO:0000313|EMBL:CCX83294.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26805..27341)
DNA (537bp) protein (179aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Shikimate kinase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E550_9FIRM
hypothetical protein
L3_069_000M1_scaffold_194_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27360..28205)
DNA (846bp) protein (282aa)
Shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Shikimate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3D1_9FIRM
L3_069_000M1_scaffold_194_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28451..28678
DNA (228bp) protein (76aa)
Acyl carrier protein n=2 Tax=Ruminococcus RepID=D4L6E2_9FIRM
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28952..30391
DNA (1440bp) protein (480aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Proline--tRNA ligase n=3 Tax=root RepID=D4L6E1_9FIRM
L3_069_000M1_scaffold_194_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30432..30620
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83302.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_194_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30693..31625
DNA (933bp) protein (311aa)
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Homoserine O-succinyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6E0_9FIRM
Displaying items 1-30 of 98 in total

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