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L3_069_000M1_scaffold_196

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_196_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

423..3920
DNA (3498bp) protein (1166aa)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:KFI42145.1}; EC=3.2.1.55 {ECO:0000313|EMBL:KFI42145.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Alpha-L-arabinofuranosidase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDB6_9BIFI
alpha-L-arabinofuranosidase
L3_069_000M1_scaffold_196_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4295..4729)
DNA (435bp) protein (145aa)
Large-conductance mechanosensitive channel n=7 Tax=Bifidobacterium RepID=E4NXR9_BIFBP
mscL; large conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000M1_scaffold_196_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4783..5583
DNA (801bp) protein (267aa)
FCD domain protein n=3 Tax=Bifidobacterium bifidum RepID=U2CI99_BIFBI
yieP; putative HTH-type transcriptional regulator
FCD domain protein {ECO:0000313|EMBL:ERI84255.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000M1_scaffold_196_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5687..7033
DNA (1347bp) protein (449aa)
gdh; NADP-specific glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=I3WFF3_BIFBI
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6850..7434)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENE5_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52223.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_196_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7551..8060)
DNA (510bp) protein (170aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WFF1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03614.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8314..8667
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WFF0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL03613.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9268..9522
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M2F0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52218.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_196_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9578..9925
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C1D5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51243.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_069_000M1_scaffold_196_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9974..11125)
DNA (1152bp) protein (384aa)
Lysophospholipase L2 n=3 Tax=Bifidobacterium bifidum RepID=E4NXR0_BIFBP
putative lysophospholipase
Putative lysophospholipase {ECO:0000313|EMBL:EKF16547.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000M1_scaffold_196_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11594..12622
DNA (1029bp) protein (343aa)
Transcription regulator CelR n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IR04_BIFBI
Transcription regulator CelR {ECO:0000313|EMBL:EKE51240.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
celR; HTH-type transcriptional regulator
L3_069_000M1_scaffold_196_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12884..13798
DNA (915bp) protein (305aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2I8J3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52214.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_196_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14555..15031
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VCC4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51239.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
alpha-L-arabinofuranosidase
L3_069_000M1_scaffold_196_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15394..15951)
DNA (558bp) protein (186aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=I3WFE2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22857.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_196_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16011..18743)
DNA (2733bp) protein (911aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFE1_BIFBI
L3_069_000M1_scaffold_196_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18879..20990)
DNA (2112bp) protein (704aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
gyrB; gyrB DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=E3END1_BIFBS
L3_069_000M1_scaffold_196_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21192..21764)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEP4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22860.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_069_000M1_scaffold_196_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21761..23074)
DNA (1314bp) protein (438aa)
DNA replication and repair protein RecF n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFD8_BIFBI
recF; DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23162..24286)
DNA (1125bp) protein (375aa)
dnaN; DnaN DNA polymerase III, beta chain (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
DNA polymerase III subunit beta n=7 Tax=Bifidobacterium RepID=E3ENC8_BIFBS
L3_069_000M1_scaffold_196_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24886..26475)
DNA (1590bp) protein (530aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Bifidobacterium bifidum RepID=E4NXQ0_BIFBP
dnaA; Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_069_000M1_scaffold_196_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


26828..26962
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=8 Tax=Bifidobacterium RepID=E3ERI4_BIFBS
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_196_22
unknown

Not on your lists

comp(26919..27335)
DNA (417bp) protein (139aa)

This feature has no annotations

L3_069_000M1_scaffold_196_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27665..28675
DNA (1011bp) protein (337aa)
Membrane protein n=5 Tax=Bifidobacterium RepID=I3WKL6_BIFBI
oxaA; membrane protein
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:ERI84276.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99035.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000M1_scaffold_196_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28757..29287
DNA (531bp) protein (177aa)
R3H domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VCB1_BIFBI
jag; putative RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:AFL05428.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_25
unknown

Not on your lists

comp(29395..29895)
DNA (501bp) protein (167aa)

This feature has no annotations

L3_069_000M1_scaffold_196_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30444..31427
DNA (984bp) protein (328aa)
Sporulation initiation inhibitor protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKL3_BIFBI
soj; sporulation initiation inhibitor protein
Sporulation initiation inhibitor protein {ECO:0000313|EMBL:AFL05426.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_196_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31431..32795
DNA (1365bp) protein (455aa)
chromosome partitioning protein ParB n=1 Tax=Bifidobacterium bifidum RepID=UPI0003005F63
Chromosome partitioning protein {ECO:0000313|EMBL:CDB22869.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
parB; putative chromosome-partitioning protein
L3_069_000M1_scaffold_196_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33263..34429)
DNA (1167bp) protein (389aa)
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:AFL05424.1}; EC=1.8.1.9 {ECO:0000313|EMBL:AFL05424.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKL1_BIFBI
L3_069_000M1_scaffold_196_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34623..39053)
DNA (4431bp) protein (1477aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNN7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22871.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
mviN; putative virulence factor protein
L3_069_000M1_scaffold_196_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39050..41227)
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQY4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51220.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
Displaying items 1-30 of 56 in total

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