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L3_069_000M1_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_228_1
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)
Non-specific DNA-binding protein Dps n=3 Tax=Parabacteroides RepID=A6L9N0_PARD8
non-specific DNA-binding protein Dps
Uncharacterized protein {ECO:0000313|EMBL:EKN32249.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_069_000M1_scaffold_228_2
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(398..1186)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7INB7_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EFI10844.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
integrase catalytic subunit
L3_069_000M1_scaffold_228_3
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1228..1797)
DNA (570bp) protein (190aa)
Transposase, OrfA, IS3/IS911 family n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7INB6_9BACE
Transposase, OrfA, IS3/IS911 family {ECO:0000313|EMBL:EFI10843.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
transposase
L3_069_000M1_scaffold_228_4
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1810..2139)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Parabacteroides distasonis RepID=A6L9M9_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR42393.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_069_000M1_scaffold_228_5
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2189..5551
DNA (3363bp) protein (1121aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
Transcription-repair-coupling factor n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6B2D2_9PORP
transcription-repair coupling factor
L3_069_000M1_scaffold_228_6
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5579..7480
DNA (1902bp) protein (634aa)
AMP-binding enzyme n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0T9R4_9BACE
AMP-binding enzyme {ECO:0000313|EMBL:EEY85266.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
long-chain-fatty-acid-CoA ligase
L3_069_000M1_scaffold_228_7
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8049..8876
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=E1YU83_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EFK62937.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
L3_069_000M1_scaffold_228_8
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9056..11644
DNA (2589bp) protein (863aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0T9R7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEY85269.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
hypothetical protein
L3_069_000M1_scaffold_228_9
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11701..12996
DNA (1296bp) protein (432aa)
Na+/H+ antiporter family protein n=2 Tax=Parabacteroides RepID=E1YU85_9PORP
Na+/H+ antiporter family protein {ECO:0000313|EMBL:EFK62939.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Na+/H+ antiporter
L3_069_000M1_scaffold_228_10
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13148..14116)
DNA (969bp) protein (323aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B8S4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ87236.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_069_000M1_scaffold_228_11
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14123..14665)
DNA (543bp) protein (181aa)
Ferredoxin domain containing protein n=4 Tax=Bacteroidales RepID=A6L9M0_PARD8
ferredoxin domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EEY85272.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
L3_069_000M1_scaffold_228_12
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14737..16851)
DNA (2115bp) protein (705aa)
KamA family protein n=2 Tax=Parabacteroides RepID=E1YU88_9PORP
KamA family protein {ECO:0000313|EMBL:EKN31953.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
hypothetical protein
L3_069_000M1_scaffold_228_13
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16975..17370)
DNA (396bp) protein (132aa)
Response regulator receiver domain protein n=3 Tax=Parabacteroides RepID=C7X6U7_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EFK62943.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
two-component system response regulator
L3_069_000M1_scaffold_228_14
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17502..19385)
DNA (1884bp) protein (628aa)
TonB-dependent receptor n=2 Tax=Parabacteroides RepID=E1YU90_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN31955.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
TonB-dependent outer membrane receptor protein
L3_069_000M1_scaffold_228_15
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19477..19878)
DNA (402bp) protein (134aa)
Putative nickel-responsive regulator n=8 Tax=Bacteroidales RepID=A6L9L6_PARD8
transcriptional regulator nickel responsive regulator
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_069_000M1_scaffold_228_16
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19968..21563)
DNA (1596bp) protein (532aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=E1YU92_9PORP
Susd and RagB outer membrane lipofamily protein {ECO:0000313|EMBL:KDS45894.1}; TaxID=1339341 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3776 Po2 i.;"
hypothetical protein
L3_069_000M1_scaffold_228_17
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21568..24873)
DNA (3306bp) protein (1102aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Parabacteroides sp. 20_3 RepID=E1YU93_9PORP
TonB-linked outer membrane , SusC/RagA family protein {ECO:0000313|EMBL:KDS45846.1}; TaxID=1339341 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3776 Po2 i.;"
hypothetical protein
L3_069_000M1_scaffold_228_18
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25046..26710)
DNA (1665bp) protein (555aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=C7X6U2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEU51800.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
hypothetical protein
L3_069_000M1_scaffold_228_19
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26740..29922)
DNA (3183bp) protein (1061aa)
SusC/RagA family TonB-linked outer membrane protein n=3 Tax=Parabacteroides RepID=K6AF69_9PORP
Putative outer membrane protein probably involved in nutrient binding {ECO:0000313|EMBL:CDB49744.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hypothetical protein
L3_069_000M1_scaffold_228_20
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30088..31107)
DNA (1020bp) protein (340aa)
Sigma factor regulatory protein, FecR/PupR family n=5 Tax=Bacteroidales RepID=D0T9S9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKN31961.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
anti-sigma factor
L3_069_000M1_scaffold_228_21
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31268..31636
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6L9K9_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS66509.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_069_000M1_scaffold_228_22
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31651..32397
DNA (747bp) protein (249aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IPQ8_9BACE
gpmA; phosphoglyceromutase
L3_069_000M1_scaffold_228_23
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32464..33036
DNA (573bp) protein (191aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=E1YU99_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EFK62953.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
RNA polymerase ECF-type sigma factor
L3_069_000M1_scaffold_228_24
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33087..34022)
DNA (936bp) protein (312aa)
Tat pathway signal sequence domain protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0T9T3_9BACE
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEY85285.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
sugar phosphate isomerase/epimerase
L3_069_000M1_scaffold_228_25
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34141..35574)
DNA (1434bp) protein (478aa)
Aspartate ammonia-lyase {ECO:0000313|EMBL:EEY85286.1}; EC=4.3.1.1 {ECO:0000313|EMBL:EEY85286.1};; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=4 Tax=Bacteroidales RepID=D0T9T4_9BACE
L3_069_000M1_scaffold_228_26
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36026..37210
DNA (1185bp) protein (395aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1339341 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3776 Po2 i.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=3 Tax=Bacteroidales RepID=D0T9T5_9BACE
L3_069_000M1_scaffold_228_27
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37207..38610
DNA (1404bp) protein (468aa)
Chorismate binding enzyme n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0T9T6_9BACE
Chorismate binding enzyme {ECO:0000313|EMBL:EEY85288.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
anthranilate synthase component I
L3_069_000M1_scaffold_228_28
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38733..39299
DNA (567bp) protein (189aa)
Glutamine amidotransferase, class I n=3 Tax=Parabacteroides RepID=E1YUA4_9PORP
Glutamine amidotransferase, class I {ECO:0000313|EMBL:EFK62958.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
anthranilate synthase component II
L3_069_000M1_scaffold_228_29
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39469..40464
DNA (996bp) protein (332aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|SAAS:SAAS00083113};; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
Anthranilate phosphoribosyltransferase n=1 Tax=Parabacteroides sp. D25 RepID=K6B8M3_9PORP
anthranilate phosphoribosyltransferase
L3_069_000M1_scaffold_228_30
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40481..41275
DNA (795bp) protein (265aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Indole-3-glycerol phosphate synthase n=3 Tax=Parabacteroides RepID=C7X6T0_9PORP
trpC; indole-3-glycerol-phosphate synthase
Displaying items 1-30 of 65 in total

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