ggKbase home page

L3_069_000M1_scaffold_244

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_244_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(174..338)
DNA (165bp) protein (55aa)
MATE efflux family protein n=2 Tax=Ruminococcus lactaris RepID=B5CL11_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL14746.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_244_2
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

616..1152
DNA (537bp) protein (179aa)
Toxin-antitoxin system, toxin component, MazF domain protein n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2R5N4_9FIRM
Toxin-antitoxin system, toxin component, MazF domain protein {ECO:0000313|EMBL:ERK45967.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
Growth inhibitor
L3_069_000M1_scaffold_244_3
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1500..2606
DNA (1107bp) protein (369aa)
Site-specific recombinase phage integrase family n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NWZ3_9FIRM
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDC02257.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Site-specific recombinase XerD
L3_069_000M1_scaffold_244_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2608..2931
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LU91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS59282.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_069_000M1_scaffold_244_5
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3338..3940)
DNA (603bp) protein (201aa)
Hnh endonuclease n=1 Tax=Clostridium sp. CAG:217 RepID=R6JLW7_9CLOT
Hnh endonuclease {ECO:0000313|EMBL:CDB50987.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
HNH endonuclease
L3_069_000M1_scaffold_244_6
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4007..4225)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50986.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L3_069_000M1_scaffold_244_7
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4306..5400)
DNA (1095bp) protein (365aa)
Addiction module antidote protein HigA n=1 Tax=Clostridium sp. CAG:217 RepID=R6INU8_9CLOT
Addiction module antidote protein HigA {ECO:0000313|EMBL:CDB50985.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
plasmid maintenance system antidote protein
L3_069_000M1_scaffold_244_8
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5384..5740)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IX33_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50984.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L3_069_000M1_scaffold_244_9
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6439..7581)
DNA (1143bp) protein (381aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Signal transduction histidine kinase n=1 Tax=Clostridium sp. CAG:217 RepID=R6IKX3_9CLOT
Signal transduction histidine kinase
L3_069_000M1_scaffold_244_10
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7578..8252)
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Clostridium sp. CAG:217 RepID=R6JLV9_9CLOT
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDB50982.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_069_000M1_scaffold_244_11
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8376..8540
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RDP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC32617.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
hypothetical protein
L3_069_000M1_scaffold_244_12
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8533..9486
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZY9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50981.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
4Fe-4S ferredoxin
L3_069_000M1_scaffold_244_13
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9492..10454
DNA (963bp) protein (321aa)
Redoxin family protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6INU3_9CLOT
Redoxin family protein {ECO:0000313|EMBL:CDB50980.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
AhpC/TSA family.
L3_069_000M1_scaffold_244_14
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10916..11914
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IX27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50979.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
L3_069_000M1_scaffold_244_15
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12238..12564)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IKW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50978.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L3_069_000M1_scaffold_244_16
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12637..13641)
DNA (1005bp) protein (335aa)
Putative membrane protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6JLV4_9CLOT
Putative membrane protein {ECO:0000313|EMBL:CDB50977.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L3_069_000M1_scaffold_244_17
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13668..13904)
DNA (237bp) protein (79aa)
Helix-turn-helix n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZY4_9CLOT
Helix-turn-helix {ECO:0000313|EMBL:CDB50976.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Helix-turn-helix.
L3_069_000M1_scaffold_244_18
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14036..15184
DNA (1149bp) protein (383aa)
Putative fibronectin type III domain protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6INT8_9CLOT
Putative fibronectin type III domain protein {ECO:0000313|EMBL:CDB50975.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
IgA Peptidase M64./Fibronectin type III domain.
L3_069_000M1_scaffold_244_19
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15236..16225
DNA (990bp) protein (330aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Clostridium sp. CAG:217 RepID=R6IX22_9CLOT
glucose-1-phosphate thymidylyltransferase
L3_069_000M1_scaffold_244_20
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16235..17263
DNA (1029bp) protein (343aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Clostridium sp. CAG:217 RepID=R6IKW1_9CLOT
L3_069_000M1_scaffold_244_21
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17264..18118
DNA (855bp) protein (285aa)
rfbD; putative dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=2 Tax=Clostridiales RepID=A5ZX59_9FIRM
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:CDD86033.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L3_069_000M1_scaffold_244_22
Lactobacillus johnsonii, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18115..18660
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=5 Tax=Lactobacillus johnsonii RepID=Q74JQ7_LACJO
dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:AAS08872.1}; TaxID=257314 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533).;"
L3_069_000M1_scaffold_244_23
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18660..19082
DNA (423bp) protein (141aa)
GNAT family acetyltransferase n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZQ5_9CLOT
GNAT family acetyltransferase {ECO:0000313|EMBL:CDB51934.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Predicted acyltransferase
L3_069_000M1_scaffold_244_24
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19134..20444
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IRP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51935.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
alpha-galactosidase
L3_069_000M1_scaffold_244_25
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20868..22040
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6J2I6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51936.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
L3_069_000M1_scaffold_244_26
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22207..23814)
DNA (1608bp) protein (536aa)
ABC transporter related n=1 Tax=Clostridium sp. CAG:217 RepID=R6JP94_9CLOT
ABC transporter related {ECO:0000313|EMBL:CDB51937.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
ABC transporter
L3_069_000M1_scaffold_244_27
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23922..24455)
DNA (534bp) protein (178aa)
Acetyltransferase n=1 Tax=Clostridium sp. CAG:217 RepID=R6INM1_9CLOT
Acetyltransferase {ECO:0000313|EMBL:CDB51938.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L3_069_000M1_scaffold_244_28
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24614..25270
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridium sp. CAG:217 RepID=R6IZQ9_9CLOT
L3_069_000M1_scaffold_244_29
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25343..26338
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IRP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51940.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
L3_069_000M1_scaffold_244_30
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26343..27164
DNA (822bp) protein (274aa)
Putative lipoprotein n=1 Tax=Clostridium sp. CAG:217 RepID=R6J2J3_9CLOT
Putative lipoprotein {ECO:0000313|EMBL:CDB51941.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
Displaying items 1-30 of 76 in total

View Taxonomy