ggKbase home page

L3_069_000M1_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_260_1
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


2..583
DNA (582bp) protein (194aa)
30S ribosomal protein S2 n=2 Tax=Bacteroides caccae RepID=A5ZKG1_9BACE
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
SSU ribosomal protein S2P
L3_069_000M1_scaffold_260_2
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

705..1697
DNA (993bp) protein (331aa)
Elongation factor Ts n=3 Tax=Bacteroides RepID=A5ZKG2_9BACE
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
translation elongation factor Ts (EF-Ts)
L3_069_000M1_scaffold_260_3
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1768..2277)
DNA (510bp) protein (170aa)
Redoxin family protein n=2 Tax=Bacteroides caccae RepID=A5ZKG3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23307.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Peroxiredoxin
L3_069_000M1_scaffold_260_4
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2299..2649)
DNA (351bp) protein (117aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=I9Q340_9BACE
Putative translation initiation factor SUI1 {ECO:0000313|EMBL:EDM19652.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
translation initiation factor 1 (eIF-1/SUI1)
L3_069_000M1_scaffold_260_5
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2815..3465
DNA (651bp) protein (217aa)
Redox-sensing transcriptional repressor Rex n=2 Tax=Bacteroides caccae RepID=A5ZKG5_9BACE
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
AT-rich DNA-binding protein
L3_069_000M1_scaffold_260_6
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3466..4080
DNA (615bp) protein (205aa)
FAH family protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZKG6_9BACE
FAH family protein {ECO:0000313|EMBL:EDM19654.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
L3_069_000M1_scaffold_260_7
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4119..4601
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Bacteroides caccae RepID=A5ZKG7_9BACE
L3_069_000M1_scaffold_260_8
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4622..5629
DNA (1008bp) protein (336aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=I8VDA6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23312.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Icc family phosphohydrolase
L3_069_000M1_scaffold_260_9
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5619..6482)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZKG9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM19657.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_069_000M1_scaffold_260_10
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6953..7543
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9ESJ6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23314.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
TonB
L3_069_000M1_scaffold_260_11
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7730..8782
DNA (1053bp) protein (351aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=3 Tax=Bacteroides RepID=A5ZKH1_9BACE
L3_069_000M1_scaffold_260_12
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8805..10169
DNA (1365bp) protein (455aa)
Peptidase, S8/S53 family n=2 Tax=Bacteroides caccae RepID=A5ZKH2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23316.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Subtilisin-like serine proteases
L3_069_000M1_scaffold_260_13
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10172..11401
DNA (1230bp) protein (410aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00195506};; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease VII large subunit n=1 Tax=Bacteroides caccae CAG:21 RepID=R5UT69_9BACE
L3_069_000M1_scaffold_260_14
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11462..11671
DNA (210bp) protein (70aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00198686};; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
Uncharacterized protein n=3 Tax=Bacteroides RepID=I9Q347_9BACE
hypothetical protein
L3_069_000M1_scaffold_260_15
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11723..12742
DNA (1020bp) protein (340aa)
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:EDM19663.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EDM19663.1};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=3 Tax=Bacteroides RepID=A5ZKH5_9BACE
L3_069_000M1_scaffold_260_16
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12848..13606
DNA (759bp) protein (253aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=3 Tax=Bacteroides RepID=A5ZKH6_9BACE
L3_069_000M1_scaffold_260_17
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13658..14758
DNA (1101bp) protein (367aa)
ATP-binding protein, Mrp/Nbp35 family n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZKH7_9BACE
ATP-binding protein, Mrp/Nbp35 family {ECO:0000313|EMBL:EDM19665.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
ATPases involved in chromosome partitioning
L3_069_000M1_scaffold_260_18
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14885..16780)
DNA (1896bp) protein (632aa)
Antioxidant, AhpC/TSA family n=3 Tax=root RepID=A5ZKH8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23322.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Thiol-disulfide isomerase and thioredoxins
L3_069_000M1_scaffold_260_19
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16926..18731)
DNA (1806bp) protein (602aa)
TonB-dependent receptor n=2 Tax=Bacteroides caccae RepID=A5ZKH9_9BACE
TonB family domain-containing protein {ECO:0000313|EMBL:EIY23323.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
outer membrane transport energization protein TonB (TC 2.C.1.1.1)
L3_069_000M1_scaffold_260_20
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18751..19116)
DNA (366bp) protein (122aa)
Transcriptional regulator, BlaI/MecI/CopY family n=3 Tax=Bacteroides RepID=A5ZKI0_9BACE
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EDM19668.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
transcriptional regulator
L3_069_000M1_scaffold_260_21
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19513..20100
DNA (588bp) protein (196aa)
Outer membrane insertion signal domain protein n=2 Tax=Bacteroides caccae RepID=A5ZKI1_9BACE
Zinc finger CCCH domain-containing protein 21 {ECO:0000313|EMBL:EIY23325.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_069_000M1_scaffold_260_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20260..21519)
DNA (1260bp) protein (420aa)
ABC-2 type transporter n=3 Tax=Bacteroides RepID=A5ZKI2_9BACE
ABC-2 type transporter {ECO:0000313|EMBL:EDM19670.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
ABC-type multidrug transport system, permease component
L3_069_000M1_scaffold_260_23
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21520..22701)
DNA (1182bp) protein (394aa)
ABC-2 type transporter n=2 Tax=Bacteroides caccae RepID=A5ZKI3_9BACE
ABC-2 type transporter {ECO:0000313|EMBL:EDM19671.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
ABC-2 type transporter.
L3_069_000M1_scaffold_260_24
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22704..23696)
DNA (993bp) protein (331aa)
Auxiliary transport protein, membrane fusion protein (MFP) family protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZKI4_9BACE
Auxiliary transport protein, membrane fusion protein (MFP) family protein {ECO:0000313|EMBL:EDM19672.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_069_000M1_scaffold_260_25
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23707..25170)
DNA (1464bp) protein (488aa)
Outer membrane efflux protein n=2 Tax=Bacteroides caccae RepID=A5ZKI5_9BACE
Outer membrane efflux protein {ECO:0000313|EMBL:EDM19673.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
alkaline protease aprF
L3_069_000M1_scaffold_260_26
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25294..25482
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZKI6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ71935.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
L3_069_000M1_scaffold_260_27
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25472..26914
DNA (1443bp) protein (481aa)
WD40-like protein n=2 Tax=Bacteroides caccae RepID=A5ZKI7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23331.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_069_000M1_scaffold_260_28
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26921..28372
DNA (1452bp) protein (484aa)
Uncharacterized protein n=2 Tax=Bacteroides caccae RepID=A5ZKI8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23332.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_069_000M1_scaffold_260_29
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28477..29415)
DNA (939bp) protein (313aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
malate dehydrogenase (NAD) (EC:1.1.1.37)
Malate dehydrogenase n=4 Tax=root RepID=A5ZKJ0_9BACE
L3_069_000M1_scaffold_260_30
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29545..30417
DNA (873bp) protein (291aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZKJ1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM19679.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
Displaying items 1-30 of 102 in total

View Taxonomy