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L3_069_000M1_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_272_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

84..1007
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Z5Z6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06761.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
transposase
L3_069_000M1_scaffold_272_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1239..1490)
DNA (252bp) protein (84aa)
Tyrosine type site-specific recombinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAR2_9PORP
Tyrosine type site-specific recombinase {ECO:0000313|EMBL:CDD13431.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
integrase
L3_069_000M1_scaffold_272_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1711..2754
DNA (1044bp) protein (348aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4W7_9PORP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
riboflavin biosynthesis protein ribD
L3_069_000M1_scaffold_272_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2871..4253
DNA (1383bp) protein (461aa)
BNR/Asp-box repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQ33_9PORP
BNR/Asp-box repeat protein {ECO:0000313|EMBL:CDD13433.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_272_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4341..5060
DNA (720bp) protein (240aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADH0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87112.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_272_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5078..5821
DNA (744bp) protein (248aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Isoprenyl transferase n=4 Tax=Parabacteroides RepID=A7ADG9_9PORP
UDP pyrophosphate synthetase
L3_069_000M1_scaffold_272_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5836..8523
DNA (2688bp) protein (896aa)
Outer membrane protein assembly complex, YaeT protein n=2 Tax=Parabacteroides merdae RepID=A7ADG8_9PORP
Outer membrane protein assembly complex, YaeT protein {ECO:0000313|EMBL:EDN87110.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein
L3_069_000M1_scaffold_272_8
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8732..9247
DNA (516bp) protein (172aa)
Outer membrane protein n=5 Tax=Parabacteroides RepID=A7ADG6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN15023.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
cationic outer membrane protein OmpH
L3_069_000M1_scaffold_272_9
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9320..9817
DNA (498bp) protein (166aa)
Outer membrane protein n=6 Tax=Parabacteroides RepID=A7ADG5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN15024.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
cationic outer membrane protein OmpH
L3_069_000M1_scaffold_272_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9971..10807
DNA (837bp) protein (279aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Glutamate racemase n=3 Tax=Parabacteroides merdae RepID=A7ADG4_9PORP
glutamate racemase
L3_069_000M1_scaffold_272_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10884..11252)
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7ADG3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87105.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_272_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11263..12513)
DNA (1251bp) protein (417aa)
Peptidase, M23 family n=2 Tax=Parabacteroides merdae RepID=A7ADG2_9PORP
Peptidase, M23 family {ECO:0000313|EMBL:EDN87104.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
metalloendopeptidase-like membrane protein
L3_069_000M1_scaffold_272_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12510..12677)
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADG1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13441.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_272_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13061..13324)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BUV7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06913.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_069_000M1_scaffold_272_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13649..14074
DNA (426bp) protein (142aa)
META domain protein n=3 Tax=Parabacteroides RepID=A7ADF7_9PORP
META domain protein {ECO:0000313|EMBL:EDN87099.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_272_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14097..14528
DNA (432bp) protein (144aa)
META domain protein n=3 Tax=Parabacteroides RepID=A7ADF6_9PORP
META domain protein {ECO:0000313|EMBL:CDD11463.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_272_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14582..16486)
DNA (1905bp) protein (635aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YUN3_9PORP
two-component regulator sensor kinase
L3_069_000M1_scaffold_272_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16520..17743)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AVF6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87096.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_272_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17804..18346
DNA (543bp) protein (181aa)
HDIG domain protein n=4 Tax=Parabacteroides RepID=A7ADF3_9PORP
HDIG domain protein {ECO:0000313|EMBL:CDD11469.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_272_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18412..21177
DNA (2766bp) protein (922aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5G5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11471.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_272_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21198..21860)
DNA (663bp) protein (221aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Uracil-DNA glycosylase n=2 Tax=Parabacteroides merdae RepID=A7ADF1_9PORP
uracil-DNA glycosylase
L3_069_000M1_scaffold_272_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21976..23013)
DNA (1038bp) protein (346aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
asparagine synthetase AsnA (EC:6.3.1.1)
Aspartate--ammonia ligase n=3 Tax=Parabacteroides RepID=A7ADF0_9PORP
L3_069_000M1_scaffold_272_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23396..23836
DNA (441bp) protein (147aa)
DoxX family protein n=3 Tax=Parabacteroides merdae RepID=A7ADE7_9PORP
DoxX family protein {ECO:0000313|EMBL:EDN87089.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_272_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24204..24407)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87086.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_069_000M1_scaffold_272_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24466..25809
DNA (1344bp) protein (448aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5H6_9PORP
L3_069_000M1_scaffold_272_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25871..27328
DNA (1458bp) protein (486aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Pseudouridine synthase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z7E5_9PORP
ribosomal large subunit pseudouridine synthase B
L3_069_000M1_scaffold_272_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27396..28802
DNA (1407bp) protein (469aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
asnC; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=3 Tax=Parabacteroides RepID=A7ADE0_9PORP
L3_069_000M1_scaffold_272_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28870..29343)
DNA (474bp) protein (158aa)
Transcriptional regulator, AsnC family n=3 Tax=Parabacteroides RepID=A7ADD9_9PORP
Transcriptional regulator AsnC family {ECO:0000313|EMBL:CDD11486.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L3_069_000M1_scaffold_272_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29494..30057
DNA (564bp) protein (188aa)
Acetyltransferase GNAT family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WK29_9PORP
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDD11488.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_272_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30397..30864)
DNA (468bp) protein (156aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADD7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11490.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 99 in total

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