ggKbase home page

L3_069_000M1_scaffold_282

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_282_1
unknown

Not on your lists

1..240
DNA (240bp) protein (80aa)

This feature has no annotations

L3_069_000M1_scaffold_282_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(335..1873)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0E4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81691.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
IS transposase
L3_069_000M1_scaffold_282_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2619..4274)
DNA (1656bp) protein (552aa)
Glycosidases (EC:3.2.1.1)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134, ECO:0000313|EMBL:CBL15129.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glycosidases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L684_9FIRM
L3_069_000M1_scaffold_282_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4345..5208)
DNA (864bp) protein (288aa)
ABC-type maltose transport systems permease component n=2 Tax=root RepID=R5DNB4_9FIRM
ABC-type maltose transport systems permease component {ECO:0000313|EMBL:CCX81693.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type maltose transport systems, permease component
L3_069_000M1_scaffold_282_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5205..6704)
DNA (1500bp) protein (500aa)
ABC-type sugar transport systems permease components n=3 Tax=root RepID=R5DS89_9FIRM
ABC-type sugar transport systems permease components {ECO:0000313|EMBL:CCX81694.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type sugar transport systems, permease components
L3_069_000M1_scaffold_282_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6941..8278)
DNA (1338bp) protein (446aa)
Maltose-binding periplasmic proteins/domains n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYM3_9FIRM
Maltose-binding periplasmic proteins/domains {ECO:0000313|EMBL:CCX81697.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Maltose-binding periplasmic proteins/domains
L3_069_000M1_scaffold_282_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8800..10266
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L680_9FIRM
L3_069_000M1_scaffold_282_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10344..11150)
DNA (807bp) protein (269aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL15124.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL15124.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L679_9FIRM
L3_069_000M1_scaffold_282_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11256..12947)
DNA (1692bp) protein (564aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamine--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L678_9FIRM
L3_069_000M1_scaffold_282_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12973..14427)
DNA (1455bp) protein (485aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000313|EMBL:CBL15122.1};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Glutamate--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L677_9FIRM
L3_069_000M1_scaffold_282_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14682..16031)
DNA (1350bp) protein (450aa)
Serine protease inhibitor n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L676_9FIRM
Serine protease inhibitor
Serine protease inhibitor {ECO:0000313|EMBL:CBL15121.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16028..17170)
DNA (1143bp) protein (381aa)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (EC:2.4.1.157)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYN2_9FIRM
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase {ECO:0000313|EMBL:CCX81707.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_282_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17636..19339
DNA (1704bp) protein (568aa)
Uncharacterized vancomycin resistance protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNC8_9FIRM
Uncharacterized vancomycin resistance protein {ECO:0000313|EMBL:CCX81708.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Uncharacterized vancomycin resistance protein
L3_069_000M1_scaffold_282_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19413..20423
DNA (1011bp) protein (337aa)
Stage V sporulation protein AD (SpoVAD) n=2 Tax=root RepID=R5DSA5_9FIRM
Stage V sporulation protein AD (SpoVAD) {ECO:0000313|EMBL:CCX81709.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Stage V sporulation protein AD (SpoVAD).
L3_069_000M1_scaffold_282_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20566..21114
DNA (549bp) protein (183aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L672_9FIRM
Membrane-associated phospholipid phosphatase
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:CBL15117.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21242..21583)
DNA (342bp) protein (114aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E0F6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15116.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21617..21880
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DYN6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15115.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22258..23514)
DNA (1257bp) protein (419aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:CBL15114.1}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:CBL15114.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Serine hydroxymethyltransferase n=2 Tax=Ruminococcus RepID=D4L669_9FIRM
L3_069_000M1_scaffold_282_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23573..24559)
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA-dihydrouridine synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L668_9FIRM
tRNA-U20-dihydrouridine synthase
L3_069_000M1_scaffold_282_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24569..25105)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81716.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_069_000M1_scaffold_282_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25263..25664)
DNA (402bp) protein (134aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSB4_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX81719.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_282_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25664..25840)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0G4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81721.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_282_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25920..26996)
DNA (1077bp) protein (359aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=2 Tax=root RepID=R5DYP5_9FIRM
6-phosphofructokinase 1 {ECO:0000313|EMBL:CCX81722.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_069_000M1_scaffold_282_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26993..29173)
DNA (2181bp) protein (727aa)
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Polyphosphate kinase n=2 Tax=root RepID=D4L664_9FIRM
L3_069_000M1_scaffold_282_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29500..30855
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L663_9FIRM
Na+-dependent transporters of the SNF family
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


31051..32997
DNA (1947bp) protein (649aa)
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Methionine--tRNA ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L662_9FIRM
L3_069_000M1_scaffold_282_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33317..34090
DNA (774bp) protein (258aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family {ECO:0000313|EMBL:CBL15106.1}; EC=3.1.21.- {ECO:0000313|EMBL:CBL15106.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Hydrolase, TatD family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L661_9FIRM
L3_069_000M1_scaffold_282_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34294..35124)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L660_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15105.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35124..35849)
DNA (726bp) protein (242aa)
LPXTG-site transpeptidase (Sortase) family protein n=3 Tax=root RepID=D4L659_9FIRM
LPXTG-site transpeptidase (sortase) family protein
LPXTG-site transpeptidase (Sortase) family protein {ECO:0000313|EMBL:CBL15104.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_282_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35855..36445)
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L658_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15103.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 57 in total

View Taxonomy