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L3_069_000M1_scaffold_359

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_359_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..436)
DNA (435bp) protein (145aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZMK3_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFQ05594.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)
L3_069_000M1_scaffold_359_2
unknown

Not on your lists

comp(473..640)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_069_000M1_scaffold_359_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(853..2058)
DNA (1206bp) protein (402aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=root RepID=D1PL82_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_359_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2167..4293)
DNA (2127bp) protein (709aa)
translation elongation factor 2 (EF-2/EF-G) (EC:3.6.5.3)
Elongation factor G n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL83_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_359_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4318..4788)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL84_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S7P
L3_069_000M1_scaffold_359_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4898..5323)
DNA (426bp) protein (142aa)
30S ribosomal protein S12 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL85_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S12P
L3_069_000M1_scaffold_359_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5807..6253
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76744.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_359_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6452..8254)
DNA (1803bp) protein (601aa)
Oligoendopeptidase F {ECO:0000313|EMBL:EFB76746.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFB76746.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Oligoendopeptidase F n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL88_9FIRM
oligoendopeptidase F
L3_069_000M1_scaffold_359_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8462..8812)
DNA (351bp) protein (117aa)
Transcriptional regulator, Spx/MgsR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL89_9FIRM
Transcriptional regulator, Spx/MgsR family {ECO:0000313|EMBL:EFB76747.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_359_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8931..12533)
DNA (3603bp) protein (1201aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL90_9FIRM
L3_069_000M1_scaffold_359_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12579..16403)
DNA (3825bp) protein (1275aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL91_9FIRM
L3_069_000M1_scaffold_359_12
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16857..17492
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q803_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC29119.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Predicted membrane protein
L3_069_000M1_scaffold_359_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17725..19107)
DNA (1383bp) protein (461aa)
Transporter n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SCN8_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Na+-dependent transporters of the SNF family
L3_069_000M1_scaffold_359_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19266..19991
DNA (726bp) protein (242aa)
Transcriptional regulator, MerR family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3E3_9FIRM
transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CBK98036.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_069_000M1_scaffold_359_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20149..21246)
DNA (1098bp) protein (366aa)
RNA polymerase sigma factor SigA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL94_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
L3_069_000M1_scaffold_359_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21301..23085)
DNA (1785bp) protein (595aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL95_9FIRM
L3_069_000M1_scaffold_359_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23313..24314)
DNA (1002bp) protein (334aa)
Putative dGTPase {ECO:0000313|EMBL:EFB76754.1}; EC=3.1.5.1 {ECO:0000313|EMBL:EFB76754.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Putative dGTPase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL96_9FIRM
L3_069_000M1_scaffold_359_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24411..25028)
DNA (618bp) protein (206aa)
Putative YigZ family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL97_9FIRM
Putative YigZ family protein {ECO:0000313|EMBL:EFB76755.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_359_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25097..25303)
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL98_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L31P
L3_069_000M1_scaffold_359_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25582..27825)
DNA (2244bp) protein (748aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit (EC:5.99.1.3)
DNA gyrase/topoisomerase IV, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH4_9FIRM
DNA gyrase/topoisomerase IV, A subunit {ECO:0000313|EMBL:EFB75759.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_359_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27979..29958)
DNA (1980bp) protein (660aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit (EC:5.99.1.3)
DNA gyrase, B subunit, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH3_9FIRM
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:EFB75758.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_069_000M1_scaffold_359_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30145..31029)
DNA (885bp) protein (295aa)
Autolytic lysozyme {ECO:0000313|EMBL:EFB75757.1}; EC=3.2.1.17 {ECO:0000313|EMBL:EFB75757.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Autolytic lysozyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH2_9FIRM
glycoside hydrolase family protein
L3_069_000M1_scaffold_359_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31175..31759)
DNA (585bp) protein (195aa)
Uncharacterized low-complexity proteins n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3E8_9FIRM
Uncharacterized low-complexity proteins
Uncharacterized low-complexity proteins {ECO:0000313|EMBL:CBK98041.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_069_000M1_scaffold_359_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31759..32499)
DNA (741bp) protein (247aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB8_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFB76776.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
short-chain dehydrogenase/reductase SDR
L3_069_000M1_scaffold_359_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32675..33136)
DNA (462bp) protein (154aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB7_9FIRM
L3_069_000M1_scaffold_359_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33146..34057)
DNA (912bp) protein (304aa)
CAAX amino terminal protease family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB6_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFB76774.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_359_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34319..35197
DNA (879bp) protein (293aa)
LysR substrate binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLB5_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EFB76773.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional regulator
L3_069_000M1_scaffold_359_28
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35382..36662)
DNA (1281bp) protein (427aa)
Glutamate synthase (NADPH) small chain n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HF14_9FIRM
Glutamate synthase (NADPH) small chain {ECO:0000313|EMBL:CDE36757.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
oxidoreductase
L3_069_000M1_scaffold_359_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36746..37912)
DNA (1167bp) protein (389aa)
UPF0348 protein SUBVAR_05242 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM5_9FIRM
UPF0348 protein SUBVAR_05242 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted nucleotidyltransferase
L3_069_000M1_scaffold_359_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38088..39296
DNA (1209bp) protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM7_9FIRM
Displaying items 1-30 of 45 in total

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