ggKbase home page

L3_069_000M1_scaffold_418

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_418_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..3028
DNA (3027bp) protein (1009aa)
HsdR-like protein type I restriction modification system (EC:3.1.21.3)
HsdR-like protein type I restriction modification system n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M457_BIFBI
HsdR-like protein type I restriction modification system {ECO:0000313|EMBL:EKF16796.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000M1_scaffold_418_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3182..4669
DNA (1488bp) protein (496aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Argininosuccinate lyase n=6 Tax=Bifidobacterium RepID=E3ER22_BIFBS
L3_069_000M1_scaffold_418_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4803..5381
DNA (579bp) protein (193aa)
HD domain protein n=4 Tax=Bifidobacterium RepID=U2BZX1_BIFBI
putative HD superfamily hydrolase
Putative HD superfamily hydrolase {ECO:0000313|EMBL:CDB24648.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_418_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5381..6160
DNA (780bp) protein (260aa)
Transporter n=4 Tax=Bifidobacterium bifidum RepID=E4NXD4_BIFBP
transporter
Transporter {ECO:0000313|EMBL:EKF15231.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000M1_scaffold_418_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6297..7619
DNA (1323bp) protein (441aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Tyrosine--tRNA ligase n=4 Tax=Bifidobacterium RepID=E3ER19_BIFBS
tyrS; tyrosyl-tRNA synthetase
L3_069_000M1_scaffold_418_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7787..8284)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVE8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83746.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
membrane glycoprotein
L3_069_000M1_scaffold_418_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8396..9565
DNA (1170bp) protein (390aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VA77_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ98338.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000M1_scaffold_418_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9571..10605
DNA (1035bp) protein (345aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) n=2 Tax=Bifidobacterium RepID=R6GAW2_9BIFI
Haloacid dehalogenase-like hydrolase (HAD superfamily) {ECO:0000313|EMBL:CDB22553.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
nagD; N-acetylglucosamine-6-phosphate deacetylase
L3_069_000M1_scaffold_418_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10686..10814
DNA (129bp) protein (43aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WIE8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83743.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000M1_scaffold_418_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10863..11621
DNA (759bp) protein (253aa)
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains n=6 Tax=Bifidobacterium RepID=E4NXD0_BIFBP
hemolysinIII-like protein
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains {ECO:0000313|EMBL:CDB22555.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_418_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11657..12331)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HRB5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49968.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_069_000M1_scaffold_418_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12479..13132)
DNA (654bp) protein (218aa)
TrkA family potassium uptake protein n=7 Tax=Bifidobacterium RepID=E4NXC8_BIFBP
potassium uptake protein
TrkA family potassium uptake protein {ECO:0000313|EMBL:CDB22557.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000M1_scaffold_418_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13313..14776)
DNA (1464bp) protein (488aa)
TrkH family potassium uptake protein {ECO:0000313|EMBL:KFI43166.1}; EC=3.6.3.14 {ECO:0000313|EMBL:KFI43166.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Cation transport protein n=2 Tax=Bifidobacterium bifidum RepID=U2BZW4_BIFBI
putative cation transporter
L3_069_000M1_scaffold_418_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15037..16011
DNA (975bp) protein (325aa)
ATP-NAD kinase (EC:2.7.1.23)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=6 Tax=Bifidobacterium RepID=E3ER09_BIFBS
L3_069_000M1_scaffold_418_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16004..17770
DNA (1767bp) protein (589aa)
DNA repair protein RecN n=7 Tax=Bifidobacterium RepID=E3ER08_BIFBS
recN; DNA repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_418_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17831..18490
DNA (660bp) protein (220aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER07_BIFBS
haloacid dehalogenase
Haloacid dehalogenase-like hydrolase (HAD superfamily) {ECO:0000313|EMBL:ADO53279.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000M1_scaffold_418_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18611..18985
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=7 Tax=Bifidobacterium RepID=E3ER06_BIFBS
fatty acyl-responsive regulator
Fatty acyl-responsive regulator {ECO:0000313|EMBL:AFL04653.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000M1_scaffold_418_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19081..20040
DNA (960bp) protein (320aa)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43161.1}; EC=3.6.3.25 {ECO:0000313|EMBL:KFI43161.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Nod factor export ATP-binding protein n=2 Tax=Bifidobacterium bifidum RepID=I3WID9_BIFBI
nodI; Nod factor export ATP-binding protein
L3_069_000M1_scaffold_418_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20024..20764
DNA (741bp) protein (247aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VA65_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83733.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_069_000M1_scaffold_418_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20766..21476
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H7H3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49951.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_069_000M1_scaffold_418_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21510..22997)
DNA (1488bp) protein (496aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000313|EMBL:EKF15538.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EKF15538.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ThrC Threonine synthase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXB9_BIFBP
L3_069_000M1_scaffold_418_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23193..24491
DNA (1299bp) protein (433aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=2 Tax=Bifidobacterium bifidum RepID=U2CGS3_BIFBI
L3_069_000M1_scaffold_418_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24488..25039
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAX5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22568.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_069_000M1_scaffold_418_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25036..25794
DNA (759bp) protein (253aa)
nadD; nicotinate-nucleotide adenylyltransferase NadD (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Probable nicotinate-nucleotide adenylyltransferase n=3 Tax=Bifidobacterium RepID=E4NXB6_BIFBP
L3_069_000M1_scaffold_418_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25929..26951
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase PrsA (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Ribose-phosphate pyrophosphokinase n=3 Tax=Bifidobacterium bifidum RepID=E4NXB5_BIFBP
L3_069_000M1_scaffold_418_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27209..28543
DNA (1335bp) protein (445aa)
Bifunctional protein GlmU n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMV7_9BIFI
glmU; UDP-N-acetylglucosamine pyrophosphorylase
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_000M1_scaffold_418_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28548..28985
DNA (438bp) protein (146aa)
Ribosomal silencing factor RsfS n=3 Tax=Bifidobacterium RepID=K2M3P3_BIFBI
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative Iojap protein
L3_069_000M1_scaffold_418_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28963..29700
DNA (738bp) protein (246aa)
Phosphoglycerate mutase n=2 Tax=Bifidobacterium RepID=R6GAX7_9BIFI
Phosphoglycerate mutase {ECO:0000313|EMBL:CDB22573.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
gpm4; phosphoglycerate mutase
L3_069_000M1_scaffold_418_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29837..30280
DNA (444bp) protein (148aa)
Transmembrane protein n=8 Tax=Bifidobacterium RepID=E3EQZ4_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE49960.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_069_000M1_scaffold_418_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30341..31603
DNA (1263bp) protein (421aa)
putative cyclomaltodextrinase or neopullalanase (EC:3.2.1.135)
Alpha amylase, catalytic domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DQ67_BIFBI
Putative alpha-amylase {ECO:0000313|EMBL:BAQ98315.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 80 in total

View Taxonomy