ggKbase home page

L3_069_000M1_scaffold_561

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_561_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(552..1583)
DNA (1032bp) protein (344aa)
Aminotransferase class I/II n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAN1_9PORP
Aminotransferase class I/II {ECO:0000313|EMBL:CDD13406.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L-threonine-O-3-phosphate decarboxylase
L3_069_000M1_scaffold_561_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1609..4590)
DNA (2982bp) protein (994aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AH28_9PORP
glycoside hydrolase family protein
L3_069_000M1_scaffold_561_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4768..5541
DNA (774bp) protein (258aa)
Tat pathway signal sequence domain protein n=2 Tax=Parabacteroides merdae RepID=A7AK60_9PORP
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EDN84961.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
NIPSNAP family containing protein
L3_069_000M1_scaffold_561_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5571..6806
DNA (1236bp) protein (412aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK59_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84960.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative acetyl xylan esterase
L3_069_000M1_scaffold_561_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


6943..7290
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Parabacteroides merdae RepID=A7AK58_9PORP
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rplS; 50S ribosomal protein L19
L3_069_000M1_scaffold_561_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7352..8872)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13401.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_561_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9047..11263
DNA (2217bp) protein (739aa)
RelA/SpoT family protein n=2 Tax=Parabacteroides RepID=K5ZJJ6_9PORP
RelA/SpoT family protein {ECO:0000313|EMBL:EKN11656.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
GTP pyrophosphokinase
L3_069_000M1_scaffold_561_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11314..12156
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZK34_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11655.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
transcriptional regulator
L3_069_000M1_scaffold_561_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12275..12865
DNA (591bp) protein (197aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPS5_9PORP
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:CDD13303.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_561_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13088..13522)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK52_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84952.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_561_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13551..14984)
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YDS1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11652.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
tRNA nucleotidyltransferase
L3_069_000M1_scaffold_561_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15142..15972
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK49_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84950.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L3_069_000M1_scaffold_561_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16054..18558)
DNA (2505bp) protein (835aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK48_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84949.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_561_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18925..19764)
DNA (840bp) protein (280aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Parabacteroides merdae RepID=A7AK46_9PORP
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EDN84947.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transporter
L3_069_000M1_scaffold_561_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19779..19931
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZKB3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13295.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_561_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19928..20755
DNA (828bp) protein (276aa)
Tetratricopeptide repeat protein n=4 Tax=Parabacteroides RepID=A7AK45_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD13294.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_561_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20829..21887)
DNA (1059bp) protein (353aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
3-isopropylmalate dehydrogenase n=2 Tax=Parabacteroides RepID=K5YDR7_9PORP
3-isopropylmalate dehydrogenase
L3_069_000M1_scaffold_561_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21920..22363)
DNA (444bp) protein (148aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Methylglyoxal synthase n=3 Tax=Parabacteroides RepID=A7AK43_9PORP
methylglyoxyl synthase
L3_069_000M1_scaffold_561_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22466..23962)
DNA (1497bp) protein (499aa)
HMGL-like protein n=3 Tax=Parabacteroides RepID=A7AK42_9PORP
HMGL-like protein {ECO:0000313|EMBL:EDN84943.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
2-isopropylmalate synthase
L3_069_000M1_scaffold_561_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24023..24610)
DNA (588bp) protein (196aa)
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
3-isopropylmalate dehydratase, small subunit n=4 Tax=Parabacteroides RepID=A7AK41_9PORP
3-isopropylmalate dehydratase small subunit
L3_069_000M1_scaffold_561_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24638..26032)
DNA (1395bp) protein (465aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
leuC; putative 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X2C6_9PORP
L3_069_000M1_scaffold_561_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26043..27539)
DNA (1497bp) protein (499aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
2-isopropylmalate synthase n=2 Tax=Parabacteroides RepID=K5YDR4_9PORP
2-isopropylmalate synthase
L3_069_000M1_scaffold_561_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27887..29074)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5ZJH9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11641.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
purple acid phosphatase
L3_069_000M1_scaffold_561_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29218..30261)
DNA (1044bp) protein (348aa)
Ketol-acid reductoisomerase {ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|SAAS:SAAS00051427};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ilv-2; Ketol-acid reductoisomerase, mitochondrial (EC:1.1.1.86)
Ketol-acid reductoisomerase n=4 Tax=Parabacteroides RepID=A7AK35_9PORP
L3_069_000M1_scaffold_561_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30347..31117)
DNA (771bp) protein (257aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZKB9_9PORP
Acyl-ACP thioesterase {ECO:0000313|EMBL:CDD13285.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
acyl-ACP thioesterase
L3_069_000M1_scaffold_561_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31125..31676)
DNA (552bp) protein (184aa)
Acetolactate synthase, small subunit n=2 Tax=Parabacteroides RepID=K6A7J1_9PORP
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDD13284.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
acetohydroxyacid synthase small subunit
L3_069_000M1_scaffold_561_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31689..33389)
DNA (1701bp) protein (567aa)
Acetolactate synthase large subunit biosynthetic type n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPQ8_9PORP
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EDN84933.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetolactate synthase large subunit
L3_069_000M1_scaffold_561_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33413..35248)
DNA (1836bp) protein (612aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4G2_9PORP
L3_069_000M1_scaffold_561_29
unknown

Not on your lists

comp(35404..35511)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_069_000M1_scaffold_561_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36083..37333
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZK16_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11635.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
aminotransferase
Displaying items 1-30 of 64 in total

View Taxonomy