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L3_069_000M1_scaffold_574

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_574_1
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..397
DNA (396bp) protein (132aa)
Hydrolase CocE/NonD family protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1W9_9FIRM
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EEA84214.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
esterase
L3_069_000M1_scaffold_574_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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867..1574
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1A9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97801.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Response regulator of the LytR/AlgR family
L3_069_000M1_scaffold_574_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1574..2887
DNA (1314bp) protein (438aa)
Putative sensor histidine kinase VirS n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1B0_9FIRM
Putative sensor histidine kinase VirS {ECO:0000313|EMBL:EDM97802.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_069_000M1_scaffold_574_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3116..5503
DNA (2388bp) protein (796aa)
glycosyl hydrolase family 2 (EC:3.2.1.31)
Beta-galactosidase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG38_9FIRM
Beta-galactosidase {ECO:0000313|EMBL:EGJ45873.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_000M1_scaffold_574_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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5520..5663
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9R1_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETO95925.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_069_000M1_scaffold_574_6
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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5981..10420
DNA (4440bp) protein (1480aa)
Putative ATP synthase F0 A subunit n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6F6F9_9FIRM
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CDA97562.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Cation/multidrug efflux pump
L3_069_000M1_scaffold_574_7

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10407..10997
DNA (591bp) protein (197aa)
Transcriptional regulator n=1 Tax=human gut metagenome RepID=K1SG41_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EKC52650.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
TetR family transcriptional regulator
L3_069_000M1_scaffold_574_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11045..11890)
DNA (846bp) protein (282aa)
Transcriptional regulator, RpiR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSB4_9FIRM
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EFB74399.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional regulators
L3_069_000M1_scaffold_574_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12086..12754)
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL71551.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_069_000M1_scaffold_574_10
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13301..14668
DNA (1368bp) protein (456aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QF02_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDC29466.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_069_000M1_scaffold_574_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14797..15717
DNA (921bp) protein (307aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H802_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95968.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_069_000M1_scaffold_574_12
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15736..16671
DNA (936bp) protein (312aa)
ABC transporter permease protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QEZ6_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDC29461.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_069_000M1_scaffold_574_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17070..17999
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.1.3.3)
Putative N-acetylneuraminate lyase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZLG7_9FIRM
Putative N-acetylneuraminate lyase {ECO:0000313|EMBL:EFQ06007.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L3_069_000M1_scaffold_574_14
Oribacterium sp. oral taxon 078, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18010..18459
DNA (450bp) protein (150aa)
YhcH/YjgK/YiaL family protein n=1 Tax=Oribacterium sp. oral taxon 078 str. F0263 RepID=U2TD25_9FIRM
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:ERL04370.1}; TaxID=1321782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 078 str. F0263.;"
hypothetical protein
L3_069_000M1_scaffold_574_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18687..19388
DNA (702bp) protein (234aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate 2-epimerase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H807_9FIRM
L3_069_000M1_scaffold_574_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19400..20314
DNA (915bp) protein (305aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZLH0_9FIRM
ROK family protein {ECO:0000313|EMBL:EFQ06010.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L3_069_000M1_scaffold_574_17
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20674..21456
DNA (783bp) protein (261aa)
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JZV0_9CLOT
Glucose-1-phosphate cytidylyltransferase {ECO:0000313|EMBL:CDE56223.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L3_069_000M1_scaffold_574_18
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21456..22538
DNA (1083bp) protein (361aa)
CDP-D-glucose-4,6-dehydratase (EC:4.2.1.45)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VNS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93836.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_069_000M1_scaffold_574_19
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22535..24520
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5X0P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA05884.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L3_069_000M1_scaffold_574_20
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24539..25879
DNA (1341bp) protein (447aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUY4_9FIRM
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:EEG93588.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
L3_069_000M1_scaffold_574_21
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25907..27775
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG93581.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_069_000M1_scaffold_574_22

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27794..28231
DNA (438bp) protein (146aa)
GtrA family protein n=1 Tax=human gut metagenome RepID=K1TRI7_9ZZZZ
GtrA family protein {ECO:0000313|EMBL:EKC72373.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
GtrA family protein
L3_069_000M1_scaffold_574_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28282..29883
DNA (1602bp) protein (534aa)
Isopropylmalate/homocitrate/citramalate synthases (EC:4.1.3.39)
HMGL-like protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A6K1_9CLOT
HMGL-like protein {ECO:0000313|EMBL:CDD38392.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_069_000M1_scaffold_574_24
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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29896..31698
DNA (1803bp) protein (601aa)
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein n=1 Tax=Acidaminococcus sp. BV3L6 RepID=U2UK74_9FIRM
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein {ECO:0000313|EMBL:ERL18650.1}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
thiamine pyrophosphate protein TPP binding domain-containing protein
L3_069_000M1_scaffold_574_25
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31713..32375
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:557 RepID=R6GJ49_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB24465.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
phosphoglycolate phosphatase
L3_069_000M1_scaffold_574_26
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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32377..33309
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6V6H5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93833.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
nucleoside-diphosphate-sugar epimerase
L3_069_000M1_scaffold_574_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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33306..34262
DNA (957bp) protein (319aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.4.1.83)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXR9_9FIRM
Dolichol monophosphate mannose synthase {ECO:0000313|EMBL:KJF39239.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_069_000M1_scaffold_574_28
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34259..35905
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2E6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG73570.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_069_000M1_scaffold_574_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36041..36961)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74757.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_069_000M1_scaffold_574_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37183..38355
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75075.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 31 in total

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