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L3_069_000M1_scaffold_729

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_729_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(359..1771)
DNA (1413bp) protein (471aa)
Transporter, major facilitator family protein n=2 Tax=Parabacteroides RepID=A7AB84_9PORP
Transporter, major facilitator family protein {ECO:0000313|EMBL:EDN88060.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hexuronate transporter
L3_069_000M1_scaffold_729_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1956..3908
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XFI9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15076.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative O-antigen related protein
L3_069_000M1_scaffold_729_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4493..5689)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZKW5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12131.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_069_000M1_scaffold_729_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5833..6402
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUT7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15073.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_729_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6415..7020
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y9H9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15072.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
MFS transporter
L3_069_000M1_scaffold_729_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7118..7396
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XFI7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15071.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
MFS transporter
L3_069_000M1_scaffold_729_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7611..8579)
DNA (969bp) protein (323aa)
Peptidyl-tRNA hydrolase domain protein n=4 Tax=Parabacteroides RepID=A7AB78_9PORP
Peptidyl-tRNA hydrolase domain protein {ECO:0000313|EMBL:EDN88054.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
peptide chain release factor RF-2
L3_069_000M1_scaffold_729_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8813..10648)
DNA (1836bp) protein (612aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6BFQ9_9PORP
AMP-binding enzyme {ECO:0000313|EMBL:CDD15069.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
long-chain-fatty-acid-CoA ligase
L3_069_000M1_scaffold_729_9
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10836..11162
DNA (327bp) protein (109aa)
Transcriptional regulator, PadR family n=7 Tax=Parabacteroides RepID=A7AB76_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX77439.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L3_069_000M1_scaffold_729_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11175..12266
DNA (1092bp) protein (364aa)
PspC domain protein n=3 Tax=Parabacteroides RepID=A7AB75_9PORP
PspC domain protein {ECO:0000313|EMBL:CDD15067.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_729_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12287..13018
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XFI2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15066.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lipoprotein
L3_069_000M1_scaffold_729_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13133..13291
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AFW2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15065.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_729_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13240..13635)
DNA (396bp) protein (132aa)
Histidine triad domain protein n=3 Tax=Parabacteroides RepID=A7AB73_9PORP
Histidine triad domain protein {ECO:0000313|EMBL:EDN88049.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
histidine triad (HIT) family protein
L3_069_000M1_scaffold_729_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13648..14118)
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=3 Tax=Parabacteroides RepID=A7AB72_9PORP
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcription elongation factor GreA
L3_069_000M1_scaffold_729_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14339..15499)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y9H1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD15062.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_729_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15695..17926
DNA (2232bp) protein (744aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XFH8_9PORP
polynucleotide phosphorylase
L3_069_000M1_scaffold_729_17
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18441..20081)
DNA (1641bp) protein (547aa)
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type n=2 Tax=Parabacteroides johnsonii RepID=B7B7A0_9PORP
Fumarate hydratase class I, aerobic {ECO:0000313|EMBL:EKN11105.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
fumarate hydratase
L3_069_000M1_scaffold_729_18
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20228..20938
DNA (711bp) protein (237aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZI05_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11106.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
transcriptional regulator
L3_069_000M1_scaffold_729_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20951..22144
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZKU8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12116.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Signal transduction histidine kinase
L3_069_000M1_scaffold_729_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22201..23154
DNA (954bp) protein (318aa)
Cobalamin biosynthesis protein CobD n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y5G2_9PORP
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cobalamin biosynthesis protein CbiB
L3_069_000M1_scaffold_729_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23170..23775
DNA (606bp) protein (202aa)
S4 domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQR5_9PORP
S4 domain protein {ECO:0000313|EMBL:CDD13653.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
pseudouridine synthase
L3_069_000M1_scaffold_729_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23780..24295
DNA (516bp) protein (172aa)
Adenosylcobinamide kinase/adenosylcobinamidephosphate guanylyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X3E9_9PORP
Adenosylcobinamide kinase/adenosylcobinamidephosphate guanylyltransferase {ECO:0000313|EMBL:CDD13654.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cobinamide kinase
L3_069_000M1_scaffold_729_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24311..25348
DNA (1038bp) protein (346aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WWG0_9PORP
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
L3_069_000M1_scaffold_729_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25377..26129
DNA (753bp) protein (251aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Cobalamin synthase n=3 Tax=Parabacteroides RepID=A7AB59_9PORP
cobalamin 5'-phosphate synthase
L3_069_000M1_scaffold_729_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26142..26675
DNA (534bp) protein (178aa)
Alpha-ribazole phosphatase n=3 Tax=Parabacteroides RepID=A7AB58_9PORP
Alpha-ribazole phosphatase {ECO:0000313|EMBL:CDD13657.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphoglycerate mutase
L3_069_000M1_scaffold_729_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26879..27721)
DNA (843bp) protein (281aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AB56_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88032.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_729_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27750..28187)
DNA (438bp) protein (146aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AB55_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13659.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_729_28
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28315..29973
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WWG4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13660.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lysyl endopeptidase
L3_069_000M1_scaffold_729_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30217..31908
DNA (1692bp) protein (564aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AB53_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88029.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000M1_scaffold_729_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32218..34539
DNA (2322bp) protein (774aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6ATE9_9PORP
Putative alpha-1 2-mannosidase {ECO:0000313|EMBL:CDD13662.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
Displaying items 1-30 of 46 in total

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