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L3_069_000M1_scaffold_778

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_778_1
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..97
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5ZYR5_9PORP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKB53569.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
L3_069_000M1_scaffold_778_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

266..2635
DNA (2370bp) protein (790aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
PAS domain S-box protein n=2 Tax=Parabacteroides merdae RepID=A7AAJ1_9PORP
PAS domain S-box
L3_069_000M1_scaffold_778_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2645..3298)
DNA (654bp) protein (218aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Putative uracil phosphoribosyltransferase n=2 Tax=Parabacteroides RepID=A7AAJ0_9PORP
Putative uracil phosphoribosyltransferase {ECO:0000313|EMBL:EDN88097.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_069_000M1_scaffold_778_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3405..3695)
DNA (291bp) protein (97aa)
DNA-binding protein HU n=4 Tax=Parabacteroides RepID=A7AAI9_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN88096.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-binding protein HU-beta
L3_069_000M1_scaffold_778_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3812..3952
DNA (141bp) protein (47aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AAI8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13183.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_778_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3949..4962
DNA (1014bp) protein (338aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X211_9PORP
UDP-N-acetylenolpyruvoylglucosamine reductase
L3_069_000M1_scaffold_778_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4963..5748
DNA (786bp) protein (262aa)
Metallo-beta-lactamase domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WV47_9PORP
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDD13185.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hydrolase
L3_069_000M1_scaffold_778_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5929..7539)
DNA (1611bp) protein (537aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6ARC7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85530.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetylhydrolase
L3_069_000M1_scaffold_778_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7660..9648
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPH8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13188.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L3_069_000M1_scaffold_778_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9639..10445)
DNA (807bp) protein (269aa)
Metallo-beta-lactamase domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X216_9PORP
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDD13189.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metallo-beta-lactamase
L3_069_000M1_scaffold_778_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10766..11419
DNA (654bp) protein (218aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=3 Tax=Parabacteroides RepID=A7AAH9_9PORP
dTDP-4-dehydrorhamnose 3 5-epimerase {ECO:0000313|EMBL:CDD13190.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dTDP-4-dehydrorhamnose 3,5-epimerase
L3_069_000M1_scaffold_778_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11442..12581
DNA (1140bp) protein (380aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
dTDP-glucose 4,6-dehydratase n=2 Tax=Parabacteroides merdae RepID=A7AAH8_9PORP
dTDP-glucose 4,6-dehydratase
L3_069_000M1_scaffold_778_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12578..15859)
DNA (3282bp) protein (1094aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AAH7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88084.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane assembly protein
L3_069_000M1_scaffold_778_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16844..16942
DNA (99bp) protein (33aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B5U1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13194.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_778_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16957..17844
DNA (888bp) protein (296aa)
LysR substrate binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AAH3_9PORP
LysR substrate binding domain protein {ECO:0000313|EMBL:EDN88080.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L3_069_000M1_scaffold_778_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17948..18994
DNA (1047bp) protein (349aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AAH2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88079.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transmembrane protein
L3_069_000M1_scaffold_778_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19076..21421
DNA (2346bp) protein (782aa)
Transglycosylase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8R7_9PORP
Transglycosylase {ECO:0000313|EMBL:CDD14802.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase
L3_069_000M1_scaffold_778_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21463..21609
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WTY7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14803.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_778_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21690..23192
DNA (1503bp) protein (501aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Glycerol kinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6P6_9PORP
glycerol kinase
L3_069_000M1_scaffold_778_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23220..26018
DNA (2799bp) protein (933aa)
Polysaccharide lyase family 8, super-sandwich domain protein n=2 Tax=Parabacteroides merdae RepID=A7AAG8_9PORP
Polysaccharide lyase family 8, super-sandwich domain protein {ECO:0000313|EMBL:EDN88075.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative chondroitinase AC precursor
L3_069_000M1_scaffold_778_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26026..27366
DNA (1341bp) protein (447aa)
dihydroorotase (EC:3.5.2.3)
Amidohydrolase family protein n=3 Tax=Parabacteroides RepID=A7AAG7_9PORP
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_069_000M1_scaffold_778_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27409..27951)
DNA (543bp) protein (181aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
7-carboxy-7-deazaguanine synthase n=3 Tax=Parabacteroides RepID=A7AAG6_9PORP
hypothetical protein
L3_069_000M1_scaffold_778_23
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27938..28270)
DNA (333bp) protein (111aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=6 Tax=Parabacteroides RepID=A7AAG5_9PORP
6-pyruvoyl tetrahydrobiopterin synthase
L3_069_000M1_scaffold_778_24
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28295..28384
DNA (90bp) protein (30aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5XYM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78990.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
L3_069_000M1_scaffold_778_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28764..30323)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6B5V3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14810.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000M1_scaffold_778_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30354..31202)
DNA (849bp) protein (283aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides merdae RepID=A7AAG3_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN88070.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-sigma factor
L3_069_000M1_scaffold_778_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31195..31746)
DNA (552bp) protein (184aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides RepID=A7AAG2_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14812.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative RNA polymerase ECF-type sigma factor
L3_069_000M1_scaffold_778_28
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31825..33093)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=2 Tax=Parabacteroides johnsonii RepID=B7B7X4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN05823.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L3_069_000M1_scaffold_778_29
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33248..33811
DNA (564bp) protein (188aa)
RNA polymerase sigma-70 factor n=6 Tax=Parabacteroides RepID=A7AAG0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX78995.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_069_000M1_scaffold_778_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34361..35728
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZR6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14815.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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