ggKbase home page

L3_069_000M1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_55_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


1..555
DNA (555bp) protein (185aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Lysine--tRNA ligase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8F8_9ACTN
LysU; lysyl-tRNA synthetase class II
L3_069_000M1_scaffold_55_2
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

975..2543
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZFF1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35314.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
membrane protein
L3_069_000M1_scaffold_55_3
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2855..3403
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8Y6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35315.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000M1_scaffold_55_4
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3685..8124
DNA (4440bp) protein (1480aa)
CoA-substrate-specific enzyme activase putative n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZM14_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74653.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
CoA-substrate-specific enzyme activase
L3_069_000M1_scaffold_55_5
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8108..8797
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A2B7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35317.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
TetR family transcriptional regulator
L3_069_000M1_scaffold_55_6
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8917..11637
DNA (2721bp) protein (907aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9C6_9ACTN
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EBA39871.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
ATPase AAA-2 domain-containing protein
L3_069_000M1_scaffold_55_7
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11852..13309
DNA (1458bp) protein (486aa)
aminoacyl-histidine dipeptidase (EC:3.4.13.3)
Xaa-His dipeptidase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9C9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74650.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_069_000M1_scaffold_55_8
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13437..14741)
DNA (1305bp) protein (435aa)
HipA domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIJ6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74649.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
HipA N-terminal domain
L3_069_000M1_scaffold_55_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14742..15173)
DNA (432bp) protein (144aa)
DNA-binding helix-turn-helix protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GEB6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74648.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Predicted transcriptional regulator with C-terminal CBS domains
L3_069_000M1_scaffold_55_10
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15294..15872)
DNA (579bp) protein (193aa)
Putative manganese efflux pump MntP n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZPX8_9ACTN
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_069_000M1_scaffold_55_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16219..17286
DNA (1068bp) protein (356aa)
DNA integrity scanning protein DisA {ECO:0000256|SAAS:SAAS00026341}; EC=2.7.7.85 {ECO:0000256|SAAS:SAAS00277574};; Diadenylate cyclase {ECO:0000256|SAAS:SAAS00207481}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5P5_9ACTN
hypothetical protein
L3_069_000M1_scaffold_55_12
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17286..18014
DNA (729bp) protein (243aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9Q1_9ACTN
L3_069_000M1_scaffold_55_13
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18004..18498
DNA (495bp) protein (165aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Collinsella RepID=A4E9D7_9ACTN
L3_069_000M1_scaffold_55_14
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18502..19968
DNA (1467bp) protein (489aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9D8_9ACTN
L3_069_000M1_scaffold_55_15
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20112..21026
DNA (915bp) protein (305aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9D9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74642.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
TrmH family RNA methyltransferase
L3_069_000M1_scaffold_55_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21030..21707
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=A4E9E0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35977.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000M1_scaffold_55_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21735..23075)
DNA (1341bp) protein (447aa)
DNA binding domain protein excisionase family n=1 Tax=Eggerthella sp. CAG:298 RepID=R7B7I1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74640.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
excisionase family DNA binding domain-containing protein
L3_069_000M1_scaffold_55_18
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24532..25722
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E2_9ACTN
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
translation elongation factor 1A (EF-1A/EF-Tu)
L3_069_000M1_scaffold_55_19
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


25984..26151
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZPU2_9ACTN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L33
L3_069_000M1_scaffold_55_20
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26317..26655
DNA (339bp) protein (113aa)
Protein translocase subunit SecE n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E5_9ACTN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Preprotein translocase subunit SecE
L3_069_000M1_scaffold_55_21
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26659..27195
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=2 Tax=Collinsella RepID=A4E9E6_9ACTN
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
transcription antitermination protein nusG
L3_069_000M1_scaffold_55_22
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


27316..27744
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Collinsella RepID=A4E9E7_9ACTN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L11
L3_069_000M1_scaffold_55_23
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


27862..28569
DNA (708bp) protein (236aa)
50S ribosomal protein L1 n=2 Tax=Collinsella RepID=A4E9E8_9ACTN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L1
L3_069_000M1_scaffold_55_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28695..29405)
DNA (711bp) protein (237aa)
Ser/Thr phosphatase family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E9_9ACTN
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EBA39894.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Predicted phosphoesterases, related to the Icc protein
L3_069_000M1_scaffold_55_25
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29402..31318)
DNA (1917bp) protein (639aa)
Basic membrane protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F0_9ACTN
Basic membrane protein {ECO:0000313|EMBL:EBA39895.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
basic membrane lipoprotein
L3_069_000M1_scaffold_55_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(31412..32179)
DNA (768bp) protein (256aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F1_9ACTN
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EBA39896.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
small-conductance mechanosensitive channel
L3_069_000M1_scaffold_55_27
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(32309..34333)
DNA (2025bp) protein (675aa)
5'-nucleotidase, C-terminal domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F2_9ACTN
5'-nucleotidase, C-terminal domain protein {ECO:0000313|EMBL:EBA39897.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
L3_069_000M1_scaffold_55_28
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34492..35286)
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5J8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74770.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ABC transporter
L3_069_000M1_scaffold_55_29
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(35279..36202)
DNA (924bp) protein (308aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F4_9ACTN
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EBA39899.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
inner-membrane translocator
L3_069_000M1_scaffold_55_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(36406..37386)
DNA (981bp) protein (327aa)
ABC transporter substrate binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBZ1_9ACTN
ABC transporter substrate binding protein {ECO:0000313|EMBL:CDA36395.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
Displaying items 1-30 of 140 in total

View Taxonomy