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L3_069_000M1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_140_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(184..822)
DNA (639bp) protein (213aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO04644.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO04644.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Bacitracin ABC transporter, ATP-binding protein BcrA family protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCN7_RUMAL
L3_069_000M1_scaffold_140_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(840..1715)
DNA (876bp) protein (292aa)
Putative membrane protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCN6_RUMAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05125.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1723..2595)
DNA (873bp) protein (291aa)
Putative membrane protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCN5_RUMAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05124.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2592..3587)
DNA (996bp) protein (332aa)
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05123.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_5
unknown

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comp(3596..4792)
DNA (1197bp) protein (399aa)

This feature has no annotations

L3_069_000M1_scaffold_140_6
unknown

Not on your lists

comp(4874..6049)
DNA (1176bp) protein (392aa)

This feature has no annotations

L3_069_000M1_scaffold_140_7
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6181..7263)
DNA (1083bp) protein (361aa)
Conserved domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCN4_RUMAL
Conserved domain protein {ECO:0000313|EMBL:EGC02904.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
L3_069_000M1_scaffold_140_8
unknown

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comp(7376..7879)
DNA (504bp) protein (168aa)

This feature has no annotations

L3_069_000M1_scaffold_140_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8221..8997
DNA (777bp) protein (259aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408, ECO:0000313|EMBL:CCO05119.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Thymidylate synthase ThyX n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBG7_9FIRM
L3_069_000M1_scaffold_140_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8987..9655
DNA (669bp) protein (223aa)
putative thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0S8_9FIRM
Thymidylate kinase {ECO:0000313|EMBL:CDC67013.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_140_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9666..10571
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8D4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05117.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10591..11133
DNA (543bp) protein (181aa)
hypothetical protein (EC:3.2.-.-)
DJ-1 family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGP4_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:CDC67011.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_140_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11130..11705
DNA (576bp) protein (192aa)
5-formyltetrahydrofolate cyclo-ligase ; AltName: Full=5,10-methenyl-tetrahydrofolate synthetase; Short=Methenyl-THF synthetase; Short=MTHFS (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279, ECO:0000313|EMBL:CCO05115.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4B8_9FIRM
L3_069_000M1_scaffold_140_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11709..13109
DNA (1401bp) protein (467aa)
YceG family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBG0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05114.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13128..14351
DNA (1224bp) protein (408aa)
putative protease (EC:3.4.-.-)
Putative protease {ECO:0000313|EMBL:CCO05113.1}; EC=3.4.-.- {ECO:0000313|EMBL:CCO05113.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Peptidase U32 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0S0_9FIRM
L3_069_000M1_scaffold_140_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14390..15370)
DNA (981bp) protein (327aa)
Tyrosine recombinase XerC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8C9_9FIRM
Tyrosine recombinase XerC {ECO:0000313|EMBL:CDC67007.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_069_000M1_scaffold_140_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15783..15884
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67006.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_140_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15884..16558
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ung; uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4B2_9FIRM
L3_069_000M1_scaffold_140_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16605..18899)
DNA (2295bp) protein (765aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO05110.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_069_000M1_scaffold_140_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18920..19693)
DNA (774bp) protein (258aa)
trmH2; RNA methyltransferase, TrmH family (EC:2.1.1.-)
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:CCO05109.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCO05109.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
RNA methyltransferase TrmH family group 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0R5_9FIRM
L3_069_000M1_scaffold_140_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19826..20086)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8C7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05108.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20619..21302)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05107.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21431..22234
DNA (804bp) protein (268aa)
8-oxoguanine DNA-glycosylase (Ogg) n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T497_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05106.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22282..23970)
DNA (1689bp) protein (563aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123, ECO:0000313|EMBL:CCO05105.1};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBE5_9FIRM
L3_069_000M1_scaffold_140_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23998..24435)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0Q8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66998.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_069_000M1_scaffold_140_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24451..25260)
DNA (810bp) protein (270aa)
murI; Glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glutamate racemase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8B8_9FIRM
L3_069_000M1_scaffold_140_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25253..26335)
DNA (1083bp) protein (361aa)
ddl; D-alanine-D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
D-alanine--D-alanine ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGM2_9FIRM
L3_069_000M1_scaffold_140_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26462..27235)
DNA (774bp) protein (258aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC:5.3.1.16)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T463_9FIRM
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000313|EMBL:CDC66995.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_140_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27245..28348)
DNA (1104bp) protein (368aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBC0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05100.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_140_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28386..30407
DNA (2022bp) protein (674aa)
Aconitate hydratase {ECO:0000313|EMBL:CCO05099.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CCO05099.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
citB; aconitate hydratase (EC:4.2.1.3)
Putative aconitate hydratase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0N6_9FIRM
Displaying items 1-30 of 97 in total

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