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L3_069_000M1_scaffold_183

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_183_1
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39..308)
DNA (270bp) protein (90aa)
Sugar-specific transcriptional regulator TrmB n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCJ4_RUMC1
Sugar-specific transcriptional regulator TrmB.
Sugar-specific transcriptional regulator TrmB {ECO:0000313|EMBL:CBL17339.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_069_000M1_scaffold_183_2
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

447..944
DNA (498bp) protein (166aa)
Helix-turn-helix n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCJ5_RUMC1
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL17340.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_069_000M1_scaffold_183_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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937..1620
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4H2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14517.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_069_000M1_scaffold_183_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1785..3320)
DNA (1536bp) protein (512aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NSN2_9FIRM
L3_069_000M1_scaffold_183_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3557..5620
DNA (2064bp) protein (688aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T123_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO05715.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_069_000M1_scaffold_183_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5784..6491)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67149.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_069_000M1_scaffold_183_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6627..7214)
DNA (588bp) protein (196aa)
lexA; Repressor LexA (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
LexA repressor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4N0_9FIRM
L3_069_000M1_scaffold_183_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7260..8732)
DNA (1473bp) protein (491aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGZ8_9FIRM
L3_069_000M1_scaffold_183_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8829..9116
DNA (288bp) protein (96aa)
Putative septation protein SpoVG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8N8_9FIRM
spoVG2; Putative septation protein SpoVG
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9199..10269)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T127_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67153.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Carbohydrate Esterase Family 2 protein
L3_069_000M1_scaffold_183_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10421..10693
DNA (273bp) protein (91aa)
Sporulation protein YabP n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4W6_9FIRM
yabP; Spore protein YabP
Spore protein YabP {ECO:0000313|EMBL:CCO05722.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10915..11364
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67251.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
yabQ; spore cortex biosynthesis protein YabQ
L3_069_000M1_scaffold_183_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11478..11837
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8W8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CDC67252.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11904..12458
DNA (555bp) protein (185aa)
RNA binding S1 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1A4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05725.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12491..12754
DNA (264bp) protein (88aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC42_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05726.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12772..13443
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4W9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CDC67255.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13608..15374)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO05729.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_069_000M1_scaffold_183_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15367..16356)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8X1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05730.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16401..18452)
DNA (2052bp) protein (684aa)
Dynamin family protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UFE4_RUMA7
Uncharacterized protein {ECO:0000313|EMBL:CCO05731.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_069_000M1_scaffold_183_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18839..19528)
DNA (690bp) protein (230aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1A7_9FIRM
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:CDC67258.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19680..21254)
DNA (1575bp) protein (525aa)
Sugar (Pentulose and hexulose) kinases n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO05733.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_069_000M1_scaffold_183_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21276..22745)
DNA (1470bp) protein (490aa)
asd; Alpha-N-arabinofuranosidase (Glycoside Hydrolase Family 51 protein ) (EC:3.2.1.55)
Alpha-L-arabinofuranosidase C-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4X4_9FIRM
Alpha-L-arabinofuranosidase C-terminal domain protein {ECO:0000313|EMBL:CDC67260.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22868..23653
DNA (786bp) protein (262aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH97_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDC67261.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transcriptional regulator, AraC family
L3_069_000M1_scaffold_183_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23750..24745)
DNA (996bp) protein (332aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THA9_9FIRM
Lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:CDC67271.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_069_000M1_scaffold_183_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25058..27613)
DNA (2556bp) protein (852aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460, ECO:0000313|EMBL:CCO05737.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Y4_9FIRM
L3_069_000M1_scaffold_183_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27610..28170)
DNA (561bp) protein (187aa)
Transposase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1B9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05738.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28175..29191)
DNA (1017bp) protein (339aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
gcp; probable O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH70_9FIRM
L3_069_000M1_scaffold_183_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29459..30172)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC58_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05740.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_183_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30162..30614)
DNA (453bp) protein (151aa)
rimI; ribosomal-protein-alanine acetyltransferase (EC:2.3.1.-)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Y6_9FIRM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CDC67275.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_183_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30625..31248)
DNA (624bp) protein (208aa)
Methyltransferase domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THB4_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:CDC67276.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
Displaying items 1-30 of 73 in total

View Taxonomy