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L3_069_000M1_scaffold_414

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_414_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..110
DNA (108bp) protein (36aa)
Cell division protein FtsK/SpoIIIE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9F3_9FIRM
ftsK; DNA translocase FtsK
Cell division protein FtsK/SpoIIIE {ECO:0000313|EMBL:CDC67427.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_414_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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131..1072
DNA (942bp) protein (314aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THU4_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04751.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1074..1289
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5B8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04752.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1346..2218
DNA (873bp) protein (291aa)
SIS domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCJ4_9FIRM
Transcriptional regulator, RpiR family
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCO04753.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2215..3450
DNA (1236bp) protein (412aa)
Flavoprotein family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1V0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04754.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3463..4794
DNA (1332bp) protein (444aa)
(d)CMP kinase {ECO:0000256|SAAS:SAAS00249031}; EC=2.7.4.25 {ECO:0000256|SAAS:SAAS00249031};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Cytidylate kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9E7_9FIRM
cytidylate kinase
L3_069_000M1_scaffold_414_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4795..6753
DNA (1959bp) protein (653aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570, ECO:0000313|EMBL:CCO04757.1}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570, ECO:0000313|EMBL:CCO04757.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THT9_9FIRM
L3_069_000M1_scaffold_414_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6933..9155
DNA (2223bp) protein (741aa)
pbp1A; Putative bifunctional transglycosylase/transpeptidase penicillin-binding protein (Glycosyltransferase Family 51 protein ) (EC:2.4.1.-)
Transglycosylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5B3_9FIRM
Transglycosylase {ECO:0000313|EMBL:CDC67420.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_414_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9223..10323
DNA (1101bp) protein (367aa)
rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCI8_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04759.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10332..10997
DNA (666bp) protein (222aa)
HAD hydrolase family IA variant 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1U5_9FIRM
HAD hydrolase family IA variant 3 {ECO:0000313|EMBL:CDC67418.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_069_000M1_scaffold_414_11
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11080..11400)
DNA (321bp) protein (107aa)
Recombinase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGE3_RUMA7
recombinase
Recombinase {ECO:0000313|EMBL:ADU21981.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_069_000M1_scaffold_414_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11503..14262)
DNA (2760bp) protein (920aa)
esterase/lipase-like protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3783B
Esterase/lipase-like protein {ECO:0000313|EMBL:CDA74339.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
esterase/lipase-like protein
L3_069_000M1_scaffold_414_13
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14235..14903)
DNA (669bp) protein (223aa)
Flavodoxin n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CEB5_9FIRM
Flavodoxin {ECO:0000313|EMBL:CDA71274.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_069_000M1_scaffold_414_14
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15003..15893)
DNA (891bp) protein (297aa)
Aldo/keto reductase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C6Y6_9FIRM
Aldo/keto reductase {ECO:0000313|EMBL:CDA71275.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
aldo/keto reductase
L3_069_000M1_scaffold_414_15
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16023..16469)
DNA (447bp) protein (149aa)
NADPH-dependent FMN reductase domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CID3_9FIRM
NADPH-dependent FMN reductase domain protein {ECO:0000313|EMBL:CDA71276.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L3_069_000M1_scaffold_414_16
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16481..17368)
DNA (888bp) protein (296aa)
Aldo/keto reductase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D0W7_9FIRM
Aldo/keto reductase {ECO:0000313|EMBL:CDA71277.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
Aldo/keto reductases, related to diketogulonate reductase
L3_069_000M1_scaffold_414_17
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17382..18080)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C495_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA71278.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
flavodoxin
L3_069_000M1_scaffold_414_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18261..18491)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37818
Uncharacterized protein {ECO:0000313|EMBL:ERJ96232.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_069_000M1_scaffold_414_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19057..19314)
DNA (258bp) protein (86aa)
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04761.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19319..19648)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JAJ7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04762.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19874..20794)
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9E3_9FIRM
tsf; translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20870..21613)
DNA (744bp) protein (248aa)
30S ribosomal protein S2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THT4_9FIRM
rpsB; ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21789..22034)
DNA (246bp) protein (82aa)
Sporulation protein YlmC/YmxH family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5A8_9FIRM
ymxH; sporulation protein, YlmC/YmxH family
Sporulation protein, YlmC/YmxH family {ECO:0000313|EMBL:CCO04765.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22145..22930)
DNA (786bp) protein (262aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCI2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04766.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23113..23883)
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1U0_9FIRM
sigG; RNA polymerase sigma factor, sigma-G factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24022..24231)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9D7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04768.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24234..25325)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THS8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04769.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_414_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25339..26403)
DNA (1065bp) protein (355aa)
Glycosyltransferase group 2 family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5A5_9FIRM
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDC67410.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glycosyltransferase Family 2 protein
L3_069_000M1_scaffold_414_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26603..27379
DNA (777bp) protein (259aa)
LytTr DNA-binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCH7_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:CDC67409.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative two-component system response regulator
L3_069_000M1_scaffold_414_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27418..28137)
DNA (720bp) protein (240aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1T6_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
sigE; RNA polymerase sigma factor, sigma-E factor
Displaying items 1-30 of 55 in total

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