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L3_069_000M1_scaffold_672

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_672_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

231..413
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3V1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66885.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_672_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

522..2108
DNA (1587bp) protein (529aa)
Site-specific DNA recombinase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C7R3_9FIRM
Site-specific DNA recombinase
Site-specific DNA recombinase {ECO:0000313|EMBL:CCO04597.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2611..2733)
DNA (123bp) protein (41aa)
Transposase (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYD6_9FIRM
Transposase {ECO:0000313|EMBL:ERJ97100.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_069_000M1_scaffold_672_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2814..4706)
DNA (1893bp) protein (631aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74432.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_069_000M1_scaffold_672_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4719..5768)
DNA (1050bp) protein (350aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Cytosine-specific methyltransferase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR78_9FIRM
C-5 cytosine methyltransferase
L3_069_000M1_scaffold_672_6

Not on your lists

comp(5816..6778)
DNA (963bp) protein (321aa)
HaeIII restriction endonuclease n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K873_9FIRM
Type II restriction enzyme HaeIII (Endonuclease HaeIII) {ECO:0000313|EMBL:EKC67367.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
restriction endonuclease HaeIII
L3_069_000M1_scaffold_672_7
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7027..7767)
DNA (741bp) protein (247aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
Cytosine-specific methyltransferase n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K6Q8_9FIRM
prophage PRU01 DNA methylase, C-5 cytosine-specific family
L3_069_000M1_scaffold_672_8
unknown

Not on your lists

comp(7945..8724)
DNA (780bp) protein (260aa)

This feature has no annotations

L3_069_000M1_scaffold_672_9
unknown

Not on your lists

comp(8779..8946)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_069_000M1_scaffold_672_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9283..9567
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C375E3
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04098.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_11
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9636..10013)
DNA (378bp) protein (126aa)
Hypothetical methyltransferase n=1 Tax=Clostridium sp. CAG:632 RepID=R5JXF7_9CLOT
Hypothetical methyltransferase {ECO:0000313|EMBL:CCY59100.1}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
SAM-dependent methyltransferase
L3_069_000M1_scaffold_672_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10098..10601
DNA (504bp) protein (168aa)
Integrase family protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KQW4_9FIRM
Integrase family protein {ECO:0000313|EMBL:CDE78221.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
integrase family protein
L3_069_000M1_scaffold_672_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11474..12004)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA16_9FIRM
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCO04596.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12136..12999)
DNA (864bp) protein (288aa)
fba; fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:CCO04595.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CCO04595.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Fructose-1 6-bisphosphate aldolase class II n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF0_9FIRM
L3_069_000M1_scaffold_672_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13100..13672)
DNA (573bp) protein (191aa)
ANTAR domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6X8_9FIRM
Response regulator with putative antiterminator output domain
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:CCO04594.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13706..15025)
DNA (1320bp) protein (440aa)
glnA; glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase {ECO:0000313|EMBL:CCO04593.1}; EC=6.3.1.2 {ECO:0000313|EMBL:CCO04593.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glutamine synthetase catalytic region n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TF91_9FIRM
L3_069_000M1_scaffold_672_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15152..17116)
DNA (1965bp) protein (655aa)
Glutamine-dependent NAD(+) synthetase {ECO:0000313|EMBL:CCO04592.1}; EC=6.3.5.1 {ECO:0000313|EMBL:CCO04592.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
nadE; glutamine-dependent NAD(+) synthetase (EC:6.3.5.1)
NAD+ synthetase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2X1_9FIRM
L3_069_000M1_scaffold_672_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17282..18367
DNA (1086bp) protein (362aa)
Histidine kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA10_9FIRM
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CCO04591.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18369..18992
DNA (624bp) protein (208aa)
Two component transcriptional regulator LuxR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZE6_9FIRM
Two component transcriptional regulator LuxR family {ECO:0000313|EMBL:CDC66513.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
two component transcriptional regulator
L3_069_000M1_scaffold_672_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19053..20870)
DNA (1818bp) protein (606aa)
GTP-binding protein TypA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAG6_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:CCO04589.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
typA; GTP-binding protein TypA
L3_069_000M1_scaffold_672_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21314..22462
DNA (1149bp) protein (383aa)
lactal_redase; lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUA9_9FIRM
Lactaldehyde reductase {ECO:0000313|EMBL:CDC64838.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_069_000M1_scaffold_672_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22614..23294
DNA (681bp) protein (227aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAG1_9FIRM
Response regulator
Response regulator {ECO:0000313|EMBL:CCO04587.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23287..24579
DNA (1293bp) protein (431aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCV5_RUMAL
histidine kinase
Histidine kinase {ECO:0000313|EMBL:CCO04586.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24719..25666
DNA (948bp) protein (316aa)
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAR2_9FIRM
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCO04585.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25671..26792
DNA (1122bp) protein (374aa)
ABC-2 type transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TJ48_9FIRM
ABC-2 type transporter {ECO:0000313|EMBL:CDC67871.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative ABC transporter membrane component
L3_069_000M1_scaffold_672_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26779..27945
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GW58_9FIRM
putative ABC transporter membrane component
Putative ABC transporter membrane component {ECO:0000313|EMBL:CCO04583.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28051..29106
DNA (1056bp) protein (352aa)
GDSL-like Lipase/Acylhydrolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6M0_9FIRM
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:CDC67870.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Carbohydrate Esterase Family 2 protein
L3_069_000M1_scaffold_672_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29229..30593)
DNA (1365bp) protein (455aa)
Permeases n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDT4_9FIRM
putative permease
Putative permease {ECO:0000313|EMBL:CCO04581.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_069_000M1_scaffold_672_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30887..32506)
DNA (1620bp) protein (540aa)
Dockerin type I repeat protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T366_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO04580.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein predicted by Glimmer/Critica
L3_069_000M1_scaffold_672_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32617..33612
DNA (996bp) protein (332aa)
Aldo/keto reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAQ7_9FIRM
Aldo-keto reductase
Aldo-keto reductase {ECO:0000313|EMBL:CCO04579.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 31 in total

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