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L3_069_000M1_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 332 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_6_1
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(263..712)
DNA (450bp) protein (150aa)
methylmalonyl-CoA epimerase (EC:5.1.99.1)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I969_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETA82378.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
L3_069_000M1_scaffold_6_2
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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893..1543
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Enterococcus avium ATCC 14025 RepID=S0RSE9_ENTAV
Uncharacterized protein {ECO:0000313|EMBL:EOT40668.1}; TaxID=1140002 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus avium ATCC 14025.;"
TetR family transcriptional regulator
L3_069_000M1_scaffold_6_3
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1721..2326
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67749.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_069_000M1_scaffold_6_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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2514..3458
DNA (945bp) protein (315aa)
Probable antibiotic-resistance protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIY1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETX03058.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative amidohydrolase
L3_069_000M1_scaffold_6_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3572..5008
DNA (1437bp) protein (479aa)
Transporter, SSS family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2CYF5_CLOSY
Transporter, SSS family {ECO:0000313|EMBL:ERI74227.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Na+/solute symporter
L3_069_000M1_scaffold_6_6
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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5089..5889
DNA (801bp) protein (267aa)
Enoyl-hydratase n=1 Tax=Ralstonia sp. PBA RepID=I9BSZ6_9RALS
3-hydroxybutyryl-CoA dehydrogenase
Tax=RBG_13_Bathyarchaeota_52_12_curated
L3_069_000M1_scaffold_6_7
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6007..6210
DNA (204bp) protein (68aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
putative transposase for insertion sequence element
L3_069_000M1_scaffold_6_8
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6295..7296
DNA (1002bp) protein (334aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
putative transposase for insertion sequence element
L3_069_000M1_scaffold_6_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7396..8535
DNA (1140bp) protein (380aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5F9Z4_9CLOT
L3_069_000M1_scaffold_6_10
Sphaerochaeta coccoides, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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8635..10029
DNA (1395bp) protein (465aa)
MATE efflux family protein n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GJH0_SPICD
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:AEC02235.1}; TaxID=760011 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1); (Spirochaeta coccoides).;"
L3_069_000M1_scaffold_6_11
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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10244..11566
DNA (1323bp) protein (441aa)
Conserved domain protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DTW4_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDA91025.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
L3_069_000M1_scaffold_6_12
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(11594..11944)
DNA (351bp) protein (117aa)
Putative site-specific recombinase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SM86_9FIRM
Putative site-specific recombinase {ECO:0000313|EMBL:CCZ46007.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_069_000M1_scaffold_6_13
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12385..12867
DNA (483bp) protein (161aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Clostridium sp. ASF502 RepID=N1ZYS2_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EMZ19303.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
RNA polymerase sigma factor, sigma-70 family
L3_069_000M1_scaffold_6_14
Paenibacillus sp. E194, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12860..13861
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJB88430.1}; TaxID=1458845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. E194.;"
L3_069_000M1_scaffold_6_15
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13931..14701)
DNA (771bp) protein (257aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Clostridium leptum CAG:27 RepID=R6NEJ2_9CLOT
L3_069_000M1_scaffold_6_16
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14694..15884)
DNA (1191bp) protein (397aa)
trpB; putative tryptophan synthase beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
Tryptophan synthase beta chain n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GPM2_SELRL
L3_069_000M1_scaffold_6_17
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15888..16490)
DNA (603bp) protein (201aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MF66_9FIRM
L3_069_000M1_scaffold_6_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16487..17272)
DNA (786bp) protein (262aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X8Z1_9FIRM
L3_069_000M1_scaffold_6_19
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17269..18300)
DNA (1032bp) protein (344aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Eubacterium sp. CAG:252 RepID=R6JX94_9FIRM
L3_069_000M1_scaffold_6_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18305..18874)
DNA (570bp) protein (190aa)
Anthranilate/para-aminobenzoate synthase component II, TrpG n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI70_EUBR3
anthranilate/para-aminobenzoate synthase component II, TrpG
Anthranilate/para-aminobenzoate synthase component II, TrpG {ECO:0000313|EMBL:ACR76707.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_069_000M1_scaffold_6_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18871..20337)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J3W9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43731.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
anthranilate/para-aminobenzoate synthase component I, TrpE
L3_069_000M1_scaffold_6_22
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(20775..21392)
DNA (618bp) protein (206aa)
Sortase and related acyltransferases (EC:2.3.1.-)
Phosphinothricin N-acetyltransferase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARL2_9FIRM
Phosphinothricin N-acetyltransferase {ECO:0000313|EMBL:CCX45593.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_069_000M1_scaffold_6_23
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(21397..22758)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EXH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX93277.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_069_000M1_scaffold_6_24
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(22937..23545)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DA52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73717.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_069_000M1_scaffold_6_25
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(23542..25029)
DNA (1488bp) protein (496aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S6D6_9FIRM
L3_069_000M1_scaffold_6_26
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

25241..26263
DNA (1023bp) protein (341aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=2 Tax=root RepID=R5APU0_9FIRM
L3_069_000M1_scaffold_6_27
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

26280..27449
DNA (1170bp) protein (390aa)
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SI50_9FIRM
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase {ECO:0000313|EMBL:CCZ46401.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase
L3_069_000M1_scaffold_6_28
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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27450..28595
DNA (1146bp) protein (382aa)
mnaA; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TG07_9FIRM
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CDC71170.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_069_000M1_scaffold_6_29
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28629..29390
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QN59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK57634.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_069_000M1_scaffold_6_30
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29450..29785)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LZ34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63606.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
Displaying items 1-30 of 332 in total

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