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L3_069_000M1_scaffold_1186

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_1186_1
unknown

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292..564
DNA (273bp) protein (91aa)

This feature has no annotations

L3_069_000M1_scaffold_1186_2
Atopobium sp. oral taxon 810, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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935..2092
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 810 str. F0209 RepID=U1WRW9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ERI05395.1}; TaxID=1321773 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 810 str. F0209.;"
hypothetical protein
L3_069_000M1_scaffold_1186_3
Olsenella profusa, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2320..3282)
DNA (963bp) protein (321aa)
PF06912 family protein n=1 Tax=Olsenella profusa F0195 RepID=U2V5E6_9ACTN
PF06912 family protein {ECO:0000313|EMBL:ERL10577.1}; TaxID=1125712 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella profusa F0195.;"
hypothetical protein
L3_069_000M1_scaffold_1186_4
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3466..4827
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D1E7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD84404.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
membrane protein
L3_069_000M1_scaffold_1186_5
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(4914..5417)
DNA (504bp) protein (168aa)
SsrA-binding protein n=2 Tax=Atopobium RepID=N2BFP9_9ACTN
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
SsrA-binding protein
L3_069_000M1_scaffold_1186_6
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(5419..6318)
DNA (900bp) protein (300aa)
Tetratricopeptide domain protein n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QY20_OLSUV
Uncharacterized protein {ECO:0000313|EMBL:EUB31525.1}; TaxID=1190621 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli MSTE5.;"
hypothetical protein
L3_069_000M1_scaffold_1186_7
Coriobacteriaceae bacterium BV3Ac1, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(6478..8568)
DNA (2091bp) protein (697aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1111135 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae.;" source="Coriobacteriaceae bacterium BV3Ac1.;"
Ribonuclease R n=1 Tax=Coriobacteriaceae bacterium BV3Ac1 RepID=U2TFB7_9ACTN
L3_069_000M1_scaffold_1186_8
Atopobium sp. oral taxon 199, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(8753..9718)
DNA (966bp) protein (322aa)
Cell division protein FtsX n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZJW6_9ACTN
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1203602 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 199 str. F0494.;"
cell division protein FtsX
L3_069_000M1_scaffold_1186_9
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9666..10685)
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F1X5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHF02724.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
cell division ATP-binding protein FtsE
L3_069_000M1_scaffold_1186_10
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(10895..11836)
DNA (942bp) protein (314aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EB80_9ACTN
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EBA39084.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L3_069_000M1_scaffold_1186_11
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(11836..12666)
DNA (831bp) protein (277aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=2 Tax=Collinsella RepID=A4EAB7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74923.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L3_069_000M1_scaffold_1186_12
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12830..13513)
DNA (684bp) protein (228aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
transaldolase (EC:2.2.1.2)
Fructose-6-phosphate aldolase n=1 Tax=Collinsella sp. CAG:289 RepID=R7D7D9_9ACTN
L3_069_000M1_scaffold_1186_13
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13971..16208)
DNA (2238bp) protein (746aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
Lysine--tRNA ligase n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F2K0_9ACTN
lysyl-tRNA synthetase (class II)
L3_069_000M1_scaffold_1186_14
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(16306..16785)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S3ALY4_9ACTN
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
transcription elongation factor GreA
L3_069_000M1_scaffold_1186_15
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16837..17148)
DNA (312bp) protein (104aa)
Sec-independent protein translocase protein TatA n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QX86_OLSUV
twin-arginine translocation protein, TatA/E family subunit
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; Flags: Precursor;; TaxID=633147 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 /; VPI D76D-27C) (Lactobacillus uli).;"
L3_069_000M1_scaffold_1186_16
Atopobium rimae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17322..18134
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLB8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEE17953.1}; TaxID=553184 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium rimae ATCC 49626.;"
spermidine synthase
L3_069_000M1_scaffold_1186_17
Atopobium parvulum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18216..19061)
DNA (846bp) protein (282aa)
Transcriptional regulator, LysR family n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8B1_ATOPD
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACV51701.1}; Flags: Precursor;; TaxID=521095 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI; 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus).;"
L3_069_000M1_scaffold_1186_18
Atopobium sp. oral taxon 199, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19159..20412)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Atopobium sp. oral taxon 199 str. F0494 RepID=S2ZL46_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EPD77101.1}; TaxID=1203602 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. oral taxon 199 str. F0494.;"
amidohydrolase
L3_069_000M1_scaffold_1186_19
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20449..21921)
DNA (1473bp) protein (491aa)
Putative uncharacterized protein n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F5V2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHF01266.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
amino acid permease-associated protein
L3_069_000M1_scaffold_1186_20
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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22213..23001
DNA (789bp) protein (263aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2NAB0_CORGP
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:AEB06296.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
Displaying 20 items

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