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L3_069_000M1_scaffold_187

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000M1_scaffold_187_1
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(292..423)
DNA (132bp) protein (44aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Blautia sp. CAG:52 RepID=R6H2M3_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDB20507.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
Signal transduction histidine kinase
L3_069_000M1_scaffold_187_2
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

687..2300
DNA (1614bp) protein (538aa)
Peptide chain release factor 3 n=1 Tax=Collinsella sp. CAG:289 RepID=R7D2W3_9ACTN
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
bacterial peptide chain release factor 3 (bRF-3)
L3_069_000M1_scaffold_187_3
Selenomonas noxia, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2376..2876
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Selenomonas noxia ATCC 43541 RepID=D4S3N7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF67212.1}; TaxID=585503 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas noxia ATCC 43541.;"
hypothetical protein
L3_069_000M1_scaffold_187_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3028..3222
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAS4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44090.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_069_000M1_scaffold_187_5
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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3212..3988
DNA (777bp) protein (259aa)
Methyltransferase, YaeB family n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FA83_9ACTN
Methyltransferase, YaeB family {ECO:0000313|EMBL:EEP44252.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
conserved hypothetical protein TIGR00104
L3_069_000M1_scaffold_187_6
unknown

Not on your lists

comp(4084..4356)
DNA (273bp) protein (91aa)

This feature has no annotations

L3_069_000M1_scaffold_187_7
Eggerthella sp. HGA1, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4334..4603)
DNA (270bp) protein (90aa)
Uncharacterized protein n=4 Tax=Bacteria RepID=C8WIS4_EGGLE
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EGC88862.1}; TaxID=910311 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. HGA1.;"
L3_069_000M1_scaffold_187_8
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5008..5718)
DNA (711bp) protein (237aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Collinsella sp. CAG:289 RepID=R7D574_9ACTN
L3_069_000M1_scaffold_187_9
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5824..6360)
DNA (537bp) protein (179aa)
AIG2 family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD29_9FIRM
AIG2 family protein {ECO:0000313|EMBL:EEG79114.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
hypothetical protein
L3_069_000M1_scaffold_187_10
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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6471..6941
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6C7J2_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN78056.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L3_069_000M1_scaffold_187_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

6951..7262
DNA (312bp) protein (104aa)
membrane protein n=1 Tax=Butyrivibrio sp. XPD2006 RepID=UPI0003B3CC07
Uncharacterized protein {ECO:0000313|EMBL:CDA82255.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_069_000M1_scaffold_187_12
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7255..8241)
DNA (987bp) protein (329aa)
DNA-deoxyinosine glycosylase {ECO:0000313|EMBL:EUB32437.1}; EC=3.2.2.15 {ECO:0000313|EMBL:EUB32437.1};; TaxID=1190621 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli MSTE5.;"
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QW77_OLSUV
G:T/U mismatch-specific DNA glycosylase
L3_069_000M1_scaffold_187_13
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8289..9878)
DNA (1590bp) protein (530aa)
Putative uncharacterized protein n=1 Tax=Olsenella sp. oral taxon 809 str. F0356 RepID=G5F320_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHF02359.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
ATPase
L3_069_000M1_scaffold_187_14
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10070..10540
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z797_9ACTN
hypothetical protein
L3_069_000M1_scaffold_187_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10632..10931
DNA (300bp) protein (100aa)
Putative RNA-binding protein, YhbY family n=2 Tax=Collinsella RepID=A4E8K5_9ACTN
Putative RNA-binding protein YhbY family {ECO:0000313|EMBL:CDA35675.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000M1_scaffold_187_16
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

10936..11616
DNA (681bp) protein (227aa)
Ribosomal RNA small subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_01523}; EC=2.1.1.242 {ECO:0000256|HAMAP-Rule:MF_01523};; 16S rRNA m2G1516 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01523}; rRNA (guanine-N(2)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01523}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
Ribosomal RNA small subunit methyltransferase J n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WLB2_9ACTN
hypothetical protein
L3_069_000M1_scaffold_187_17
unknown

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11625..11852
DNA (228bp) protein (76aa)

This feature has no annotations

L3_069_000M1_scaffold_187_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12004..12384
DNA (381bp) protein (127aa)
Transcriptional regulator GntR family n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZQ47_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75464.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
putative transcriptional regulator
L3_069_000M1_scaffold_187_19
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12399..13304
DNA (906bp) protein (302aa)
ABC transporter ATP-binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5V5_9ACTN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA36492.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
ABC transporter ATP-binding component
L3_069_000M1_scaffold_187_20
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13301..13975
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E877_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA40093.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_069_000M1_scaffold_187_21
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14125..16395)
DNA (2271bp) protein (757aa)
formate acetyltransferase (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4H6_9ACTN
Formate acetyltransferase {ECO:0000313|EMBL:CDD84698.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
L3_069_000M1_scaffold_187_22
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16494..17231)
DNA (738bp) protein (246aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase activating enzyme n=1 Tax=Collinsella sp. CAG:289 RepID=R7D2Y7_9ACTN
L3_069_000M1_scaffold_187_23
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17442..18170)
DNA (729bp) protein (243aa)
Transcriptional regulator Crp/Fnr family n=1 Tax=Collinsella sp. CAG:289 RepID=R7D596_9ACTN
Transcriptional regulator Crp/Fnr family {ECO:0000313|EMBL:CDD84702.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
CarD family transcriptional regulator
L3_069_000M1_scaffold_187_24
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18306..19442)
DNA (1137bp) protein (379aa)
CobW/P47K family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9U8_9ACTN
CobW/P47K family protein {ECO:0000313|EMBL:CDA36473.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
cobalamin synthesis protein P47K
L3_069_000M1_scaffold_187_25
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19541..20920)
DNA (1380bp) protein (460aa)
NAD-dependent aldehyde dehydrogenases (EC:1.2.1.3)
Aldehyde dehydrogenase n=1 Tax=Collinsella sp. CAG:289 RepID=R7D2W2_9ACTN
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
L3_069_000M1_scaffold_187_26
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21053..22255)
DNA (1203bp) protein (401aa)
Alcohol dehydrogenase iron-dependent n=1 Tax=Collinsella sp. CAG:289 RepID=R7D1U0_9ACTN
Alcohol dehydrogenase iron-dependent {ECO:0000313|EMBL:CDD84574.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
alcohol dehydrogenase
L3_069_000M1_scaffold_187_27
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22486..23616)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIN5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA36469.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
L3_069_000M1_scaffold_187_28
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23722..24936)
DNA (1215bp) protein (405aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZC75_9ACTN
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDA36470.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
diguanylate cyclase (GGDEF) domain
L3_069_000M1_scaffold_187_29
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25216..27261
DNA (2046bp) protein (682aa)
Putative translation elongation factor G n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4I3_9ACTN
Putative translation elongation factor G {ECO:0000313|EMBL:CDD84703.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
tetracycline resistance protein
L3_069_000M1_scaffold_187_30
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(27287..28009)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A2J6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35392.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
30S ribosomal protein S12
Displaying items 1-30 of 76 in total

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