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L3_069_024G1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_024G1_scaffold_56_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..121
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DXP4_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI84631.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
transposase
L3_069_024G1_scaffold_56_2
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

165..458
DNA (294bp) protein (98aa)
Putative transposase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPP7_BIFLS
transposase
Transposase {ECO:0000313|EMBL:AIZ14576.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L3_069_024G1_scaffold_56_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

536..1288
DNA (753bp) protein (251aa)
Integrase core domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ATD3_BIFLN
Integrase catalytic region {ECO:0000313|EMBL:BAP83067.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
integrase catalytic subunit
L3_069_024G1_scaffold_56_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1328..1810
DNA (483bp) protein (161aa)
Bacterial group 4 Ig-like protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CVD4_BIFBR
Bacterial group 4 Ig-like protein {ECO:0000313|EMBL:ERI88028.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
glycosyl hydrolase
L3_069_024G1_scaffold_56_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1841..3403
DNA (1563bp) protein (521aa)
Bacterial group 4 Ig-like protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CVD4_BIFBR
Bacterial group 4 Ig-like protein {ECO:0000313|EMBL:ERI88028.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
glycosyl hydrolase
L3_069_024G1_scaffold_56_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3463..4290
DNA (828bp) protein (276aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E1Q0_BIFBR
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:ERI88027.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
hypothetical protein
L3_069_024G1_scaffold_56_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4366..5379)
DNA (1014bp) protein (338aa)
Ribose-phosphate diphosphokinase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E6F2_BIFBR
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:ERI88026.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
prsA2; prsa2
L3_069_024G1_scaffold_56_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5501..8119)
DNA (2619bp) protein (873aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CTY9_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI88025.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
hypothetical protein
L3_069_024G1_scaffold_56_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


8727..9017
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=26 Tax=Bifidobacterium RepID=RS6_BIFLO
rpsF; SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_069_024G1_scaffold_56_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9074..9700
DNA (627bp) protein (209aa)
Single-stranded DNA-binding protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E6E8_BIFBR
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
single-strand DNA-binding protein
L3_069_024G1_scaffold_56_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


9761..10009
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=21 Tax=Bifidobacterium RepID=RS18_BIFLO
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_069_024G1_scaffold_56_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


10029..10475
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CBZ1_BIFBR
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
rplI; 50S ribosomal protein L9
L3_069_024G1_scaffold_56_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10859..11119
DNA (261bp) protein (87aa)
Phosphocarrier, HPr family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CVC5_BIFBR
Phosphocarrier, HPr family {ECO:0000313|EMBL:ERI88018.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
ptsH; PTS system protein HPr
L3_069_024G1_scaffold_56_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11119..12813
DNA (1695bp) protein (565aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E1P2_BIFBR
PTS system enzyme I
L3_069_024G1_scaffold_56_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13047..13781
DNA (735bp) protein (245aa)
Channel protein, MIP family n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E6E3_BIFBR
Channel protein, MIP family {ECO:0000313|EMBL:ERI88016.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Glycerol uptake facilitator protein
L3_069_024G1_scaffold_56_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13865..16525)
DNA (2661bp) protein (887aa)
Copper-exporting ATPase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CBY6_BIFBR
Copper-exporting ATPase {ECO:0000313|EMBL:ERI88014.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
copper-transporting ATPase
L3_069_024G1_scaffold_56_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16635..16916
DNA (282bp) protein (94aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C6W9_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE89888.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_069_024G1_scaffold_56_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17043..18470
DNA (1428bp) protein (476aa)
RmuC domain protein n=3 Tax=Bifidobacterium breve RepID=D4BM70_BIFBR
RmuC-like DNA recombination protein
RmuC domain protein {ECO:0000313|EMBL:EFE89889.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99266.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_069_024G1_scaffold_56_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18467..19096
DNA (630bp) protein (210aa)
Orotate phosphoribosyltransferase {ECO:0000313|EMBL:ABE94977.1}; EC=2.4.2.10 {ECO:0000313|EMBL:ABE94977.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Orotate phosphoribosyltransferase n=3 Tax=Bifidobacterium breve RepID=F9Y0Z3_BIFBU
Orotate phosphoribosyltransferase
L3_069_024G1_scaffold_56_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19189..20127
DNA (939bp) protein (313aa)
RNA methyltransferase, TrmH family n=3 Tax=Bifidobacterium breve RepID=F6C6X2_BIFBA
23S rRNA methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:EPD76550.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_069_024G1_scaffold_56_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20328..21266
DNA (939bp) protein (313aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZJJ4_BIFBR
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI88009.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
ATP-binding protein of ABC transporter system
L3_069_024G1_scaffold_56_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21263..22309
DNA (1047bp) protein (349aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S3A2W5_BIFBR
Permease protein of ABC transporter system
Uncharacterized protein {ECO:0000313|EMBL:EPD76552.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_069_024G1_scaffold_56_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22480..23205)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZIE1_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76553.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Hypothetical protein
L3_069_024G1_scaffold_56_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24042..24500
DNA (459bp) protein (153aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E1M8_BIFBR
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
L3_069_024G1_scaffold_56_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24504..26045
DNA (1542bp) protein (514aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E6C9_BIFBR
L3_069_024G1_scaffold_56_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26071..27570
DNA (1500bp) protein (500aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Bifidobacterium breve RepID=S2ZJK0_BIFBR
Glutamyl-tRNA(Gln) amidotransferase subunit B
L3_069_024G1_scaffold_56_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27711..28757
DNA (1047bp) protein (349aa)
Acetyltransferase, GNAT family n=4 Tax=Bifidobacterium breve RepID=F6C6X9_BIFBA
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERI87999.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_069_024G1_scaffold_56_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28764..29078
DNA (315bp) protein (105aa)
Uncharacterized protein n=24 Tax=Bifidobacterium RepID=B3DU29_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK71152.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_069_024G1_scaffold_56_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29249..30862
DNA (1614bp) protein (538aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C6Y1_BIFBA
Hypothetical protein, possibly FAD-containing oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:AEF26808.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_069_024G1_scaffold_56_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31309..33198
DNA (1890bp) protein (630aa)
rho; transcription termination factor Rho (EC:3.6.4.-)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Transcription termination factor Rho n=2 Tax=Bifidobacterium breve RepID=F6C6Y2_BIFBA
Displaying items 1-30 of 105 in total

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