ggKbase home page

L3_069_024G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_024G1_scaffold_52_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

673..1098
DNA (426bp) protein (142aa)
Translation initiation factor IF-3 n=213 Tax=Clostridium difficile RepID=Q189N1_CLOD6
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|RuleBase:RU000646}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_069_024G1_scaffold_52_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1126..1320
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=6 Tax=Clostridium difficile RepID=T4PQA1_CLODI
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_52_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1376..1732
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=107 Tax=Clostridium difficile RepID=C9XLR3_CLODC
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L3_069_024G1_scaffold_52_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2042..2587
DNA (546bp) protein (182aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=C9XLR4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE02535.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_024G1_scaffold_52_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3063..4988
DNA (1926bp) protein (642aa)
Calcineurin-like phosphoesterase family protein n=2 Tax=Clostridium difficile RepID=T4PJB8_CLODI
Putative nucleotide phosphodiesterase {ECO:0000313|EMBL:CDT31497.1}; Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDS84457.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative nucleotide phosphodiesterase
L3_069_024G1_scaffold_52_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5389..7293
DNA (1905bp) protein (635aa)
Calcineurin-like phosphoesterase family protein n=2 Tax=Clostridium difficile RepID=T4PQ72_CLODI
Calcineurin-like phosphoesterase family protein {ECO:0000313|EMBL:EQI92258.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
nucleotide phosphodiesterase
L3_069_024G1_scaffold_52_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8024..8803
DNA (780bp) protein (260aa)
Putative short chain dehydrogenase/reductase,SDRfamily {ECO:0000313|EMBL:CEJ97235.1}; Short chain dehydrogenase {ECO:0000313|EMBL:CKH62640.1}; EC=1.-.-.- {ECO:0000313|EMBL:CKH62640.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Short chain dehydrogenase family protein n=36 Tax=Clostridium difficile RepID=T3I7Q1_CLODC
short chain dehydrogenase/reductase
L3_069_024G1_scaffold_52_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9113..9988)
DNA (876bp) protein (292aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=G6BU84_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE02542.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_024G1_scaffold_52_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10810..11628)
DNA (819bp) protein (273aa)
MerR regulatory family protein n=102 Tax=Clostridium difficile RepID=T3ICH7_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL32784.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_52_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11796..12377
DNA (582bp) protein (194aa)
TetR-family transcriptional regulator n=171 Tax=Clostridium difficile RepID=C9XLS0_CLODC
TetR family transcriptional regulator
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQE68847.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_024G1_scaffold_52_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12374..12568
DNA (195bp) protein (65aa)
Uncharacterized protein n=57 Tax=Clostridium difficile RepID=F3Y5Y3_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH62512.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97239.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_024G1_scaffold_52_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12732..14474)
DNA (1743bp) protein (581aa)
M3 family oligoendopeptidase {ECO:0000313|EMBL:EQG77649.1}; EC=3.4.24.- {ECO:0000313|EMBL:EQG77649.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
M3 family oligoendopeptidase n=9 Tax=Clostridium difficile RepID=T2UZH3_CLODI
putative exported metalloendopeptidase
L3_069_024G1_scaffold_52_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14945..16279
DNA (1335bp) protein (445aa)
Potassium uptake , TrkH family protein n=193 Tax=Clostridium difficile RepID=C9XLS2_CLODC
cation transport protein
Putative cation transport protein, Trk family {ECO:0000313|EMBL:CCL32788.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_52_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16590..17261
DNA (672bp) protein (224aa)
TrkA N-terminal domain protein n=214 Tax=Clostridium difficile RepID=D5Q0S7_CLODI
cation transport protein
Putative regulator of K+ conductance {ECO:0000313|EMBL:CCK96617.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_069_024G1_scaffold_52_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17450..18247
DNA (798bp) protein (266aa)
RNA 2'-O ribose methyltransferase substrate binding family protein n=77 Tax=Clostridium difficile RepID=T2TQ86_CLODI
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQG77867.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
RNA methylase
L3_069_024G1_scaffold_52_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18959..19978
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Phenylalanine--tRNA ligase alpha subunit n=184 Tax=Clostridium difficile RepID=Q189P4_CLOD6
L3_069_024G1_scaffold_52_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19995..22388
DNA (2394bp) protein (798aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Phenylalanine--tRNA ligase beta subunit n=152 Tax=Clostridium difficile RepID=C9XLS6_CLODC
pheT; phenylalanyl-tRNA synthetase subunit beta
L3_069_024G1_scaffold_52_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22413..23003
DNA (591bp) protein (197aa)
Cell division protein ZapA n=199 Tax=Clostridium difficile RepID=G6B7D3_CLODI
putative cell-division protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_024G1_scaffold_52_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23318..24001
DNA (684bp) protein (228aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=G6BUA3_CLODI
hypothetical protein
Putative membrane protein, DUF1275 family {ECO:0000313|EMBL:CCL32794.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_52_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24493..27093
DNA (2601bp) protein (867aa)
Peptidase U32 family protein n=2 Tax=Clostridium difficile RepID=T4PJD4_CLODI
Peptidase U32 family protein {ECO:0000313|EMBL:EQG77793.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
U32 family peptidase
L3_069_024G1_scaffold_52_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27197..27775
DNA (579bp) protein (193aa)
HDIG domain protein n=151 Tax=Clostridium difficile RepID=G6BUA5_CLODI
phosphohydrolase
Putative metal-dependent phosphohydrolase {ECO:0000313|EMBL:CCL20823.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_024G1_scaffold_52_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27809..28285
DNA (477bp) protein (159aa)
Mutator mutT protein {ECO:0000313|EMBL:EQG77442.1}; EC=3.6.1.- {ECO:0000313|EMBL:EQG77442.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Mutator mutT protein n=2 Tax=Clostridium difficile RepID=T4PQC2_CLODI
putative hydrolase, NUDIX family
L3_069_024G1_scaffold_52_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28803..29624
DNA (822bp) protein (274aa)
4Fe-4S binding domain protein n=115 Tax=Clostridium difficile RepID=T2V3K3_CLODI
Putative nitroreductase {ECO:0000313|EMBL:CCL20825.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
4fe-4s binding domain protein
L3_069_024G1_scaffold_52_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29847..32360
DNA (2514bp) protein (838aa)
Diguanylate cyclase domain protein n=3 Tax=Clostridium difficile RepID=T2WY73_CLODI
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL20826.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative diguanylate kinase signaling protein
L3_069_024G1_scaffold_52_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32564..34015)
DNA (1452bp) protein (484aa)
Xaa-His dipeptidase family protein {ECO:0000313|EMBL:EQG77865.1}; EC=3.4.13.20 {ECO:0000313|EMBL:EQG77865.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Peptidase D, aminoacyl-histidine dipeptidase n=143 Tax=Clostridium difficile RepID=Q189Q4_CLOD6
aminoacyl-histidine dipeptidase
L3_069_024G1_scaffold_52_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34334..36712
DNA (2379bp) protein (793aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Endonuclease MutS2 n=2 Tax=Clostridium difficile RepID=T4PQ92_CLODI
DNA mismatch repair protein
L3_069_024G1_scaffold_52_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36778..37191
DNA (414bp) protein (138aa)
Uncharacterized protein n=166 Tax=Clostridium difficile RepID=G6BUB1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG77884.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_069_024G1_scaffold_52_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


37450..39150
DNA (1701bp) protein (567aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Arginine--tRNA ligase n=152 Tax=Clostridium difficile RepID=SYR_CLOD6
L3_069_024G1_scaffold_52_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39404..40327
DNA (924bp) protein (308aa)
Uncharacterized protein n=11 Tax=Clostridium difficile RepID=T2V315_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77635.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_024G1_scaffold_52_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40332..40538)
DNA (207bp) protein (69aa)
Uncharacterized protein n=219 Tax=Clostridium difficile RepID=F3Y5Y4_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG78026.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Displaying items 1-30 of 78 in total

View Taxonomy