ggKbase home page

L3_069_024G1_scaffold_149

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_024G1_scaffold_149_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..543
DNA (543bp) protein (181aa)
Phage integrase n=3 Tax=Clostridiales RepID=E5VIB0_9FIRM
Site-specific recombinase XerD
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EHJ32163.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_069_024G1_scaffold_149_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(706..948)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PFF5_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31357.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_149_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1083..1799)
DNA (717bp) protein (239aa)
Putative pentose-5-phosphate 3-epimerase {ECO:0000313|EMBL:CCL23498.1}; EC=5.1.3.1 {ECO:0000313|EMBL:CCL23498.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Ribulose-phosphate 3 epimerase family protein n=23 Tax=Clostridium difficile RepID=T2TFX1_CLODI
pentose-5-phosphate 3-epimerase
L3_069_024G1_scaffold_149_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2225..3439
DNA (1215bp) protein (405aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase family protein n=2 Tax=Clostridium difficile RepID=T4PGC0_CLODI
L3_069_024G1_scaffold_149_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4057..5385
DNA (1329bp) protein (443aa)
Uncharacterized protein n=69 Tax=Clostridium difficile RepID=G6BYS6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL23500.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
conserved hypothetical protein
L3_069_024G1_scaffold_149_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5513..6703)
DNA (1191bp) protein (397aa)
putative peptidase, M20D family (EC:3.5.1.-)
Amidohydrolase {ECO:0000313|EMBL:CKG83576.1}; EC=3.-.-.- {ECO:0000313|EMBL:CKG83576.1};; Putative peptidase, M20D family {ECO:0000313|EMBL:CEJ99752.1}; EC=3.5.1.- {ECO:0000313|EMBL:CEJ99752.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Amidohydrolase family protein n=2 Tax=Clostridium difficile RepID=T4PFF9_CLODI
L3_069_024G1_scaffold_149_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6809..8188)
DNA (1380bp) protein (460aa)
Amidohydrolase family protein n=2 Tax=Clostridium difficile RepID=T4PFA6_CLODI
Putative aminobenzoyl-glutamate utilization protein B {ECO:0000313|EMBL:CCL23502.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
amidohydrolase
L3_069_024G1_scaffold_149_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8219..9427)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=G6B5G4_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ70006.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_024G1_scaffold_149_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10452..11906)
DNA (1455bp) protein (485aa)
bglA4; 6-phospho-beta-glucosidase, bglA4 (EC:3.2.1.86)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CDS88995.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS88995.1};; Aryl-6-phospho-beta-glucosidase {ECO:0000313|EMBL:CDS89626.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS89626.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cellulase family protein n=1 Tax=Clostridium difficile P30 RepID=T4Z4X2_CLODI
L3_069_024G1_scaffold_149_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11926..13797)
DNA (1872bp) protein (624aa)
bglF3; PTS system, beta-glucoside-specific IIABCcomponent, bglF3 (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component family protein {ECO:0000313|EMBL:EQE59757.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQE59757.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
PTS system, beta-glucoside-specific IIABC component family protein n=115 Tax=Clostridium difficile RepID=T2UD65_CLODI
L3_069_024G1_scaffold_149_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13787..14647)
DNA (861bp) protein (287aa)
PRD domain protein n=2 Tax=Clostridium difficile RepID=T4PFG3_CLODI
PRD domain protein {ECO:0000313|EMBL:EHJ34397.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
bglG; beta-glucoside bgl operon transcription antiterminator
L3_069_024G1_scaffold_149_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14910..15053)
DNA (144bp) protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS89630.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_024G1_scaffold_149_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15293..15697)
DNA (405bp) protein (135aa)
Uncharacterized protein n=37 Tax=Clostridium difficile RepID=T2TE30_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32500.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
conserved hypothetical protein
L3_069_024G1_scaffold_149_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15889..17076)
DNA (1188bp) protein (396aa)
Glycosyltransferase, MGT family protein {ECO:0000313|EMBL:EQG74393.1}; EC=2.4.1.- {ECO:0000313|EMBL:EQG74393.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Glycosyltransferase, MGT family protein n=2 Tax=Clostridium difficile RepID=T4PGD0_CLODI
putative UDP-glycosyltransferase, MGT subfamily
L3_069_024G1_scaffold_149_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17108..17533)
DNA (426bp) protein (142aa)
Transcriptional regulator, AbrB family domain protein n=2 Tax=Clostridium difficile RepID=T4PFM1_CLODI
Transcriptional regulator, AbrB family
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:CAJ70012.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_024G1_scaffold_149_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17661..17813)
DNA (153bp) protein (51aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3FEI7_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL23510.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_024G1_scaffold_149_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18011..18760
DNA (750bp) protein (250aa)
4Fe-4S binding domain protein n=30 Tax=Clostridium difficile RepID=T2VL72_CLODI
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDS89641.1}; Putative flavodoxin/nitric oxide synthase {ECO:0000313|EMBL:CDS89011.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
flavodoxin/nitric oxide synthase
L3_069_024G1_scaffold_149_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18924..19289)
DNA (366bp) protein (122aa)
ArsR-family transcriptional regulator n=175 Tax=Clostridium difficile RepID=C9XQT0_CLODC
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CAJ70015.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_024G1_scaffold_149_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19305..20087)
DNA (783bp) protein (261aa)
4Fe-4S binding domain protein n=137 Tax=Clostridium difficile RepID=T3G526_CLODC
nitroreductase
4fe-4s binding domain protein {ECO:0000313|EMBL:CEJ99764.1}; Nitroreductase {ECO:0000313|EMBL:CKG83264.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_024G1_scaffold_149_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20492..21919)
DNA (1428bp) protein (476aa)
bglA; 6-phospho-beta-glucosidase (EC:3.2.1.86)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CCL23514.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CCL23514.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
6-phospho-beta-glucosidase n=83 Tax=Clostridium difficile RepID=Q184W2_CLOD6
L3_069_024G1_scaffold_149_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21980..23908)
DNA (1929bp) protein (643aa)
bglF4; PTS system, beta-glucoside-specific IIABCcomponent, bglF4 (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component family protein {ECO:0000313|EMBL:EQG74508.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQG74508.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
PTS system, beta-glucoside-specific IIABC component family protein n=7 Tax=Clostridium difficile RepID=T3UA27_CLODI
L3_069_024G1_scaffold_149_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24053..24895)
DNA (843bp) protein (281aa)
Transcription antiterminator n=176 Tax=Clostridium difficile RepID=C9XQT4_CLODC
transcription antiterminator
Transcription antiterminator, PTS operon regulator {ECO:0000313|EMBL:CCL31382.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_024G1_scaffold_149_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25409..27910)
DNA (2502bp) protein (834aa)
FtsX-like permease family protein n=1 Tax=Clostridium difficile P30 RepID=T4Z740_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS89024.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative ABC transporter permease
L3_069_024G1_scaffold_149_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27922..28608)
DNA (687bp) protein (229aa)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T4PGE0_CLODI
ABC transporter related protein {ECO:0000313|EMBL:CDS89026.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter related protein
L3_069_024G1_scaffold_149_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29494..30897)
DNA (1404bp) protein (468aa)
PTS system, beta-glucoside-like IIBC component {ECO:0000313|EMBL:CCL31386.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL31386.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
PTS system beta-glucoside-like transporter subunit IIBC (EC:2.7.1.69)
PTS system, glucose-like IIB component domain protein n=2 Tax=Clostridium difficile RepID=T4P9N8_CLODI
L3_069_024G1_scaffold_149_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30936..31607)
DNA (672bp) protein (224aa)
Beta-phosphoglucomutase (Beta-D-Glucose 1,6-phosphomutase) {ECO:0000313|EMBL:CDT60796.1}; EC=5.4.2.6 {ECO:0000313|EMBL:CDT60796.1};; Putative glucose-1-phosphate phosphodismutase, beta-phosphoglucomutase {ECO:0000313|EMBL:CDS89673.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
pgmB1; Beta-phosphoglucomutase (beta-D-Glucose1,6-phosphomutase) (EC:5.4.2.6)
Beta-phosphoglucomutase n=2 Tax=Clostridium difficile RepID=T4PFH5_CLODI
L3_069_024G1_scaffold_149_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31609..33999)
DNA (2391bp) protein (797aa)
Glycosyl hydrolase/phosphorylase {ECO:0000313|EMBL:CCL23519.1}; EC=2.4.1.- {ECO:0000313|EMBL:CCL23519.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glycosyl hydrolase/phosphorylase (EC:2.4.1.-)
Glycosyl hydrolase family 65 central catalytic domain protein n=36 Tax=Clostridium difficile RepID=T2W9E0_CLODI
L3_069_024G1_scaffold_149_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34025..35473)
DNA (1449bp) protein (483aa)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CDT60766.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDT60766.1};; Aryl-phospho-beta-d-glucosidase {ECO:0000313|EMBL:CDS89678.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS89678.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Aryl-phospho-beta-D-glucosidase BglH n=24 Tax=Clostridium difficile RepID=T2UD79_CLODI
acsB3; 6-phospho-beta-glucosidase
L3_069_024G1_scaffold_149_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35878..36765)
DNA (888bp) protein (296aa)
Cupin domain protein n=105 Tax=Clostridium difficile RepID=T3G5U4_CLODC
AraC family transcriptional regulator
Cupin domain protein {ECO:0000313|EMBL:EQE59761.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_024G1_scaffold_149_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36865..37314)
DNA (450bp) protein (150aa)
PTS system, fructose subfamily, IIA component domain protein {ECO:0000313|EMBL:EQI76636.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQI76636.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
PTS system, fructose subfamily, IIA component domain protein n=83 Tax=Clostridium difficile RepID=T2T9L9_CLODI
PTS system fructose-like transporter subunit IIA
Displaying items 1-30 of 74 in total

View Taxonomy