ggKbase home page

L3_069_024G1_scaffold_386

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_024G1_scaffold_386_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..759)
DNA (759bp) protein (253aa)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:CDT55284.1}; EC=4.3.1.15 {ECO:0000313|EMBL:CDT55284.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
dpaL; diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase n=2 Tax=Clostridium difficile RepID=T3LZH8_CLODI
L3_069_024G1_scaffold_386_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1382..1921)
DNA (540bp) protein (180aa)
Uncharacterized protein n=94 Tax=Clostridium difficile RepID=C9XRA5_CLODC
hypothetical protein
2'-5' RNA ligase superfamily protein {ECO:0000313|EMBL:EQG73743.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_024G1_scaffold_386_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1998..3815)
DNA (1818bp) protein (606aa)
Sigma-54 interaction domain protein n=150 Tax=Clostridium difficile RepID=G6BQL6_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EHJ33818.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
sigma-54-dependent transcriptional regulator
L3_069_024G1_scaffold_386_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4199..4576)
DNA (378bp) protein (126aa)
Translation initiation inhibitor n=208 Tax=Clostridium difficile RepID=T2T987_CLODI
tdcF; regulatory endoribonuclease
Putative regulatory endoribonuclease {ECO:0000313|EMBL:CCK95694.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_069_024G1_scaffold_386_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5481..5966
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PES8_CLODI
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73800.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_024G1_scaffold_386_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6166..6705)
DNA (540bp) protein (180aa)
Flavin reductase {ECO:0000313|EMBL:CDS85523.1}; Iron-sulfur flavoprotein {ECO:0000313|EMBL:CKG80988.1}; EC=1.-.-.- {ECO:0000313|EMBL:CKG80988.1};; Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:CDT55422.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
NADPH-dependent FMN reductase family protein n=121 Tax=Clostridium difficile RepID=T3G2D4_CLODC
putative NADPH-dependent FMN reductase
L3_069_024G1_scaffold_386_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6698..7111)
DNA (414bp) protein (138aa)
HTH-type transcriptional regulator AdhR n=187 Tax=Clostridium difficile RepID=C9XRB0_CLODC
MerR family transcriptional regulator
MerR-family transcriptional regulator {ECO:0000313|EMBL:CBE06820.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_024G1_scaffold_386_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7147..8268)
DNA (1122bp) protein (374aa)
Aldo/keto reductase family protein n=132 Tax=Clostridium difficile RepID=C9XRD6_CLODC
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:CBE06822.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_024G1_scaffold_386_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8867..10519
DNA (1653bp) protein (551aa)
Peptidase propeptide and YPEB domain protein n=51 Tax=Clostridium difficile RepID=G6BQM2_CLODI
cwp21; putative cell surface peptidase, M4family-cwp20
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:EQE59583.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_024G1_scaffold_386_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10818..11567
DNA (750bp) protein (250aa)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T4PET4_CLODI
ABC transporter ATP-binding protein
Abc transporter, atp-binding protein abc transporter,atp-binding protein {ECO:0000313|EMBL:CBE06825.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_024G1_scaffold_386_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11580..13607
DNA (2028bp) protein (676aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PEM5_CLODI
Abc transporter, permease associated with salivaricin lantibiotic {ECO:0000313|EMBL:CBE06827.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
salivaricin lantibiotic ABC transporter permease
L3_069_024G1_scaffold_386_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13751..15334
DNA (1584bp) protein (528aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=5 Tax=Clostridium difficile RepID=T2XPD4_CLODI
Putative sensor histidine kinase {ECO:0000313|EMBL:CDT55566.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
sensor histidine kinase
L3_069_024G1_scaffold_386_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15306..15926
DNA (621bp) protein (207aa)
Bacterial regulatory s, luxR family protein n=27 Tax=Clostridium difficile RepID=T2ZD05_CLODI
Salavaricin two-component response regulator {ECO:0000313|EMBL:CDS85504.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
salavaricin two-component response regulator
L3_069_024G1_scaffold_386_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16115..17041)
DNA (927bp) protein (309aa)
Uncharacterized protein n=72 Tax=Clostridium difficile RepID=G6BQM3_CLODI
Putative phage-related protein {ECO:0000313|EMBL:CCL31463.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
putative phage-related protein
Displaying 14 items

View Taxonomy