ggKbase home page

L3_069_024G1_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_024G1_scaffold_324_1
Pseudomonas sp., Proteobacteria, Bacteria

Not on your lists

2..553
DNA (552bp) protein (184aa)
YD repeat (Two copies) n=3 Tax=Escherichia coli RepID=L3EFX2_ECOLX
Type IV secretion protein Rhs; TaxID=306 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp.;"
rhs family protein
L3_069_024G1_scaffold_324_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

555..911
DNA (357bp) protein (119aa)
Uncharacterized protein n=5 Tax=Escherichia coli RepID=L3EDB0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ESA64617.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
hypothetical protein
L3_069_024G1_scaffold_324_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(950..1192)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=I0VMM9_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EID65395.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
hypothetical protein
L3_069_024G1_scaffold_324_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1676..1903
DNA (228bp) protein (76aa)
Tautomerase PptA {ECO:0000256|HAMAP-Rule:MF_00718}; EC=5.3.2.- {ECO:0000256|HAMAP-Rule:MF_00718};; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
Tautomerase PptA n=19 Tax=Enterobacteriaceae RepID=PPTA_SHISS
ydcE; 4-oxalocrotonate tautomerase
L3_069_024G1_scaffold_324_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1907..2476)
DNA (570bp) protein (190aa)
Flavin reductase like domain protein n=5 Tax=Escherichia coli RepID=M9B700_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIG99498.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
yddH; hypothetical protein
L3_069_024G1_scaffold_324_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2651..3496
DNA (846bp) protein (282aa)
N-hydroxyarylamine O-acetyltransferase {ECO:0000313|EMBL:KIG99497.1}; EC=2.3.1.118 {ECO:0000313|EMBL:KIG99497.1};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
nhoA; N-hydroxyarylamine O-acetyltransferase (EC:2.3.1.118)
N-hydroxyarylamine O-acetyltransferase n=4 Tax=Escherichia coli RepID=I0VMN2_ECOLX
L3_069_024G1_scaffold_324_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3592..4485)
DNA (894bp) protein (298aa)
Phenazine biosynthesis protein PhzF family protein n=5 Tax=Escherichia coli RepID=I0VMN3_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:END53645.1}; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
hypothetical protein
L3_069_024G1_scaffold_324_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4564..5244)
DNA (681bp) protein (227aa)
Respiratory nitrate reductase, gamma subunit {ECO:0000313|EMBL:EMX32378.1}; EC=1.7.99.4 {ECO:0000313|EMBL:EMX32378.1};; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
Respiratory nitrate reductase 2, gamma subunit n=96 Tax=Enterobacteriaceae RepID=B2NDP7_ECOLX
narI; respiratory nitrate reductase, gamma subunit NarI
L3_069_024G1_scaffold_324_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5241..5936)
DNA (696bp) protein (232aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=2 Tax=Escherichia coli RepID=I0VMN5_ECOLX
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:EID65401.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
nitrate reductase 2 subunit delta
L3_069_024G1_scaffold_324_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5936..7480)
DNA (1545bp) protein (515aa)
Nitrate reductase, beta subunit {ECO:0000313|EMBL:KEO34866.1}; EC=1.7.99.4 {ECO:0000313|EMBL:KEO34866.1};; TaxID=1444163 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-250-04_S3_C2.;"
Cryptic nitrate reductase 2, beta subunit n=278 Tax=Enterobacteriaceae RepID=J7QQW7_ECOLX
narY; nitrate reductase 2 subunit beta
L3_069_024G1_scaffold_324_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7477..11217)
DNA (3741bp) protein (1247aa)
Nitrate reductase, alpha subunit n=2 Tax=Escherichia coli RepID=I0VMN7_ECOLX
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:EID65403.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
narZ; nitrate reductase 2, alpha subunit
L3_069_024G1_scaffold_324_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11299..12687)
DNA (1389bp) protein (463aa)
Nitrate extrusion protein n=20 Tax=Escherichia coli RepID=B6IAM1_ECOSE
narU; nitrate/nitrite transport protein NarU
Nitrate/nitrite transport protein NarU {ECO:0000313|EMBL:AFH11226.1}; TaxID=566546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666; / NRRL B-766 / W).;"
L3_069_024G1_scaffold_324_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..14306)
DNA (1296bp) protein (432aa)
Leucine Rich Repeat family protein n=1 Tax=Escherichia coli STEC_DG131-3 RepID=G2ABM7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEL81532.1}; TaxID=1444157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S3_C2.;"
hypothetical protein
L3_069_024G1_scaffold_324_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14366..14656)
DNA (291bp) protein (97aa)
Outer membrane porin n=87 Tax=Enterobacteriaceae RepID=B7LZ66_ECO8A
yddL; outer membrane porin
Uncharacterized protein {ECO:0000313|EMBL:KHJ15639.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_069_024G1_scaffold_324_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14915..15739)
DNA (825bp) protein (275aa)
Aromatic amino acid exporter n=1 Tax=Escherichia coli ATCC 35150 RepID=U5B7E6_ECOLX
yddG; Permease of the drug/metabolite transporter (DMT) superfamily
Aromatic amino acid exporter {ECO:0000313|EMBL:EYV10944.1}; TaxID=1446596 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:NM str. 2010C-3526.;"
L3_069_024G1_scaffold_324_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16028..16615
DNA (588bp) protein (196aa)
formate dehydrogenase, subunit alpha (EC:1.7.99.4)
Formate dehydrogenase, nitrate-inducible, major subunit {ECO:0000313|EMBL:EFK01325.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EFK01325.1};; TaxID=749545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 182-1.;"
Formate dehydrogenase-N, alpha subunit, nitrate-inducible n=9 Tax=Escherichia RepID=B7LQW5_ESCF3
L3_069_024G1_scaffold_324_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16726..18972
DNA (2247bp) protein (749aa)
Formate dehydrogenase-N, nitrate-inducible, alpha subunit n=1 Tax=Escherichia coli W26 RepID=I0VMP3_ECOLX
Formate dehydrogenase-N, nitrate-inducible, alpha subunit {ECO:0000313|EMBL:EID65409.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
nitrate-inducible formate dehydrogenase-N alpha subunit
L3_069_024G1_scaffold_324_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18985..19869
DNA (885bp) protein (295aa)
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:EFK44096.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EFK44096.1};; TaxID=679206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 119-7.;"
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit n=565 Tax=Bacteria RepID=FDNH_ECOLI
fdnH; formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible
L3_069_024G1_scaffold_324_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19862..20515
DNA (654bp) protein (218aa)
Formate dehydrogenase N gamma subunit n=1 Tax=Escherichia coli IS5 RepID=V6ET23_ECOLX
formate dehydrogenase-N subunit gamma
Formate dehydrogenase-N subunit gamma {ECO:0000313|EMBL:EJE72193.1}; TaxID=1165939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H11 str. CVM9455.;"
L3_069_024G1_scaffold_324_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20566..20850)
DNA (285bp) protein (95aa)
Uncharacterized protein n=7 Tax=Escherichia coli RepID=J7R0W1_ECOLX
yddM; putative DNA-binding transcriptional regulator
Addiction module antidote protein HigA {ECO:0000313|EMBL:EIG83836.1}; TaxID=869669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2741.;"
L3_069_024G1_scaffold_324_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20997..22007)
DNA (1011bp) protein (337aa)
adhP; alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=610 Tax=Enterobacteriaceae RepID=C3TAB7_ECOLX
Alcohol dehydrogenase, propanol-preferring {ECO:0000313|EMBL:EOV99430.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L3_069_024G1_scaffold_324_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22141..23838)
DNA (1698bp) protein (566aa)
NAD-dependent malic enzyme {ECO:0000256|HAMAP-Rule:MF_01619}; Short=NAD-ME {ECO:0000256|HAMAP-Rule:MF_01619};; EC=1.1.1.38 {ECO:0000256|HAMAP-Rule:MF_01619};; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
NAD-dependent malic enzyme n=296 Tax=Enterobacteriaceae RepID=MAO1_ECO81
malic protein NAD-binding protein
L3_069_024G1_scaffold_324_23
Escherichia sp. KTE52, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23995..24132)
DNA (138bp) protein (46aa)
Stationary-phase-induced ribosome-associated protein n=1369 Tax=Enterobacteriaceae RepID=SRA_ECO57
rpsV; 30S ribosomal subunit S22
Stationary-phase-induced ribosome-associated protein {ECO:0000313|EMBL:EOV50270.1}; TaxID=1182659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE52.;"
L3_069_024G1_scaffold_324_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24234..24449)
DNA (216bp) protein (72aa)
Protein bdm homolog n=1105 Tax=cellular organisms RepID=BDM_ECO57
Biofilm-dependent modulation protein Bdm, putative
Putative biofilm-dependent modulation protein {ECO:0000313|EMBL:EII21595.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L3_069_024G1_scaffold_324_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24795..25226
DNA (432bp) protein (144aa)
peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin osmC {ECO:0000313|EMBL:EZJ52188.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EZJ52188.1};; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
Peroxiredoxin OsmC n=833 Tax=Enterobacteriaceae RepID=OSMC_ECOLI
L3_069_024G1_scaffold_324_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25282..26208)
DNA (927bp) protein (309aa)
D-ala-D-ala transporter subunit n=3 Tax=Enterobacteriaceae RepID=E0J6D8_ECOLW
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADX50943.1}; TaxID=595495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain ATCC 55124 / KO11).;"
L3_069_024G1_scaffold_324_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26201..27187)
DNA (987bp) protein (329aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein n=7 Tax=Escherichia coli RepID=N2XFY4_ECOLX
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) Putative hemine transporter ATP-binding subunit {ECO:0000313|EMBL:CDL26747.1}; TaxID=1432555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC7.;"
ddpD; ABC transporter ATP-binding protein
L3_069_024G1_scaffold_324_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27184..28080)
DNA (897bp) protein (299aa)
Inner membrane ABC transporter permease protein YddQ n=336 Tax=Enterobacteriaceae RepID=A7ZLT4_ECO24
ATP-dependent peptide transporter membrane subunit
D-ala-D-ala transporter subunit {ECO:0000313|EMBL:KHJ15625.1}; Inner membrane ABC transporter permease {ECO:0000313|EMBL:AJE55874.1}; Putative transport protein {ECO:0000313|EMBL:ACI83616.1}; Strain O157 SvETEC scaffold42.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ44662.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_069_024G1_scaffold_324_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28077..29099)
DNA (1023bp) protein (341aa)
Binding--dependent transport system inner membrane component family protein n=20 Tax=Escherichia coli RepID=H5FE09_ECOLX
Putative D,D-dipeptide transport system permease protein ddpB {ECO:0000313|EMBL:ENA07932.1}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
ddpB; D-ala-D-ala ABC transporter membrane protein
L3_069_024G1_scaffold_324_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29101..30651)
DNA (1551bp) protein (517aa)
Dipeptide ABC transporter, permease protein DppA n=35 Tax=Escherichia coli RepID=D7YEJ2_ECOLX
Dipeptide ABC transporter, permease protein DppA {ECO:0000313|EMBL:ESA83791.1}; TaxID=1268979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907357.;"
ddpA; D-ala-D-ala transporter subunit DdpA
Displaying items 1-30 of 36 in total

View Taxonomy