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L3_069_049G1_scaffold_29

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Displaying items 1-30 of 324 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_049G1_scaffold_29_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

353..1291
DNA (939bp) protein (313aa)
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EQG74538.1}; EC=3.5.-.- {ECO:0000313|EMBL:EQG74538.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Delta-lactam-biosynthetic de-N-acetylase n=168 Tax=Clostridium difficile RepID=T3GBF0_CLODC
polysaccharide deacetylase
L3_069_049G1_scaffold_29_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1663..3036)
DNA (1374bp) protein (458aa)
Putative membrane protein n=6 Tax=Clostridium difficile RepID=T3SSF8_CLODI
putative transporter
Putative membrane protein {ECO:0000313|EMBL:EQG74440.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_049G1_scaffold_29_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3202..4482)
DNA (1281bp) protein (427aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
HAMP domain protein n=128 Tax=Clostridium difficile RepID=T3GEU5_CLODC
two-component sensor histidine kinase
L3_069_049G1_scaffold_29_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4517..5221)
DNA (705bp) protein (235aa)
Response regulator n=215 Tax=Clostridium difficile RepID=C9XN93_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CCL23084.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_049G1_scaffold_29_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5404..6468)
DNA (1065bp) protein (355aa)
TIGR00374 family protein n=136 Tax=Clostridium difficile RepID=T2TAR5_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL30993.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6471..7169)
DNA (699bp) protein (233aa)
Polysaccharide deacetylase family protein n=142 Tax=Clostridium difficile RepID=T2UE83_CLODI
polysaccharide deacetylase
Putative polysaccharide deacetylase {ECO:0000313|EMBL:CCL30994.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7160..8257)
DNA (1098bp) protein (366aa)
Putative monogalactosyldiacylglycerol synthase {ECO:0000313|EMBL:CEJ99351.1}; UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000313|EMBL:CKH85059.1}; EC=2.4.1.- {ECO:0000313|EMBL:CKH85059.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Monogalactosyldiacylglycerol (MGDG) synthase family protein n=171 Tax=Clostridium difficile RepID=T3GEU9_CLODC
putative monogalactosyldiacylglycerol synthase
L3_069_049G1_scaffold_29_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8580..9770)
DNA (1191bp) protein (397aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Serine hydroxymethyltransferase n=30 Tax=Clostridium difficile RepID=D5Q926_CLODI
L3_069_049G1_scaffold_29_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10098..10886
DNA (789bp) protein (263aa)
Uncharacterized protein n=218 Tax=Clostridium difficile RepID=D5Q925_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL30997.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10886..11359
DNA (474bp) protein (158aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=G6BTM2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL30998.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11451..11891)
DNA (441bp) protein (147aa)
Positive regulator of sigma(E), RseC/MucC family protein n=204 Tax=Clostridium difficile RepID=C9XNA0_CLODC
regulator of the sigma(E) factor
Positive regulator of sigma(E), RseC/MucC family protein {ECO:0000313|EMBL:EQI79493.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_069_049G1_scaffold_29_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11906..12199)
DNA (294bp) protein (98aa)
Copper-sensing transcriptional repressor CsoR n=200 Tax=Clostridium difficile RepID=C9XNA1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31000.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12242..12643)
DNA (402bp) protein (134aa)
Uncharacterized protein n=145 Tax=Clostridium difficile RepID=G6B4F6_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33148.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_069_049G1_scaffold_29_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12876..14996
DNA (2121bp) protein (707aa)
AAA domain family protein n=2 Tax=Clostridium difficile RepID=T4PGJ5_CLODI
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CCL23094.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Transcriptional regulator, sigma-54-dependent
L3_069_049G1_scaffold_29_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15221..16387
DNA (1167bp) protein (389aa)
C-S lyase family protein n=2 Tax=Clostridium difficile RepID=T4PAF0_CLODI
Putative pyridoxal phosphate-dependent transferase {ECO:0000313|EMBL:CCL23095.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
aminotransferase
L3_069_049G1_scaffold_29_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16412..17854
DNA (1443bp) protein (481aa)
Na+/H+ antiporter NhaC n=159 Tax=Clostridium difficile RepID=T2TBT3_CLODI
putative Na+/H+ antiporter, NhaC family
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EQG74191.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_049G1_scaffold_29_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17857..18126
DNA (270bp) protein (90aa)
Putative membrane protein n=111 Tax=Clostridium difficile RepID=T3GF70_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQE60344.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_049G1_scaffold_29_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18203..19708)
DNA (1506bp) protein (502aa)
Cell wall binding repeat 2 family protein n=29 Tax=Clostridium difficile RepID=T3N1H2_CLODI
cell surface protein
Cell surface protein {ECO:0000313|EMBL:CBE06094.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_049G1_scaffold_29_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20002..20871
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=203 Tax=Clostridium difficile RepID=C9XNA7_CLODC
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCL31007.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20983..21789)
DNA (807bp) protein (269aa)
Carbon-nitrogen hydrolase family protein n=77 Tax=Clostridium difficile RepID=T3GB53_CLODC
putative nitrilase/cyanide hydratase andapolipoprotein N-acyltransferase
Putative nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CAJ69624.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_049G1_scaffold_29_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21803..23035)
DNA (1233bp) protein (411aa)
Permease for cytosine/purine, uracil, thiamine, allantoin family protein n=11 Tax=Clostridium difficile RepID=T3EGR3_CLODI
cytosine permease
Putative cytosine permease {ECO:0000313|EMBL:CCL31009.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_29_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23494..25281)
DNA (1788bp) protein (596aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EQE60383.1}; EC=6.1.1.- {ECO:0000313|EMBL:EQE60383.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
aspS; Aspartyl-tRNA synthetase (Aspartate--tRNAligase) (AspRS) (EC:6.1.1.12)
Aspartate--tRNA ligase n=125 Tax=Clostridium difficile RepID=T3GF40_CLODC
L3_069_049G1_scaffold_29_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25355..26617)
DNA (1263bp) protein (421aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Histidine--tRNA ligase n=166 Tax=Clostridium difficile RepID=SYH_CLOD6
hisS; histidyl-tRNA synthetase
L3_069_049G1_scaffold_29_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26607..28163)
DNA (1557bp) protein (519aa)
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDS95894.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS95894.1};; Oxygen-independent coproporphyrinogen-III oxidase 2 {ECO:0000313|EMBL:CDS89034.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS89034.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hemZ; Coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=3 Tax=Clostridium difficile RepID=T4PGK6_CLODI
L3_069_049G1_scaffold_29_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28254..28868)
DNA (615bp) protein (205aa)
Metallo-beta-lactamase superfamily protein n=157 Tax=Clostridium difficile RepID=T3G9Z5_CLODC
hydrolase beta-lactamase-like
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQE60388.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_049G1_scaffold_29_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28883..29332)
DNA (450bp) protein (150aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
D-tyrosyl-tRNA(Tyr) deacylase n=190 Tax=Clostridium difficile RepID=DTD_CLOD6
L3_069_049G1_scaffold_29_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29357..31564)
DNA (2208bp) protein (736aa)
GTP pyrophosphokinase (RelA/SpoT) {ECO:0000313|EMBL:CCK99237.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCK99237.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
GTP pyrophosphokinase (RelA/SpoT) n=201 Tax=Clostridium difficile RepID=Q183H8_CLOD6
GTP pyrophosphokinase
L3_069_049G1_scaffold_29_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31638..32150)
DNA (513bp) protein (171aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Adenine phosphoribosyltransferase n=212 Tax=Clostridium difficile RepID=APT_CLOD6
apt; adenine phosphoribosyltransferase
L3_069_049G1_scaffold_29_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32163..34613)
DNA (2451bp) protein (817aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EQG74135.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQG74135.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Clostridium difficile RepID=G6BTK2_CLODI
recJ; single-stranded-DNA-specific exonuclease
L3_069_049G1_scaffold_29_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34626..36290)
DNA (1665bp) protein (555aa)
ABC1 family protein n=2 Tax=Clostridium difficile RepID=T4PAG7_CLODI
ubiquinone biosynthesis protein
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:CCL31018.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 324 in total

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