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L3_069_049G1_scaffold_135

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_049G1_scaffold_135_1
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..127
DNA (126bp) protein (42aa)
Site-specific recombinase, resolvase family protein n=5 Tax=Clostridium difficile RepID=T2Y6K7_CLODI
Recombinase {ECO:0000313|EMBL:ERT61558.1}; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
resolvase domain-containing protein
L3_069_049G1_scaffold_135_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(600..1238)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P42 RepID=T4PE99_CLODI
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG75706.1}; Uncharacterized protein {ECO:0000313|EMBL:CEK00028.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_049G1_scaffold_135_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1648..1824)
DNA (177bp) protein (59aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=F3Y5W2_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH15105.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L3_069_049G1_scaffold_135_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2725..3126
DNA (402bp) protein (134aa)
RNHCP domain protein n=2 Tax=Clostridium difficile RepID=T4PDZ9_CLODI
hypothetical protein
Putative zinc finger protein {ECO:0000313|EMBL:CCL31626.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_135_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3132..4190
DNA (1059bp) protein (353aa)
putative ribosome biogenesis GTPase RsgA;putative EngC-like GTPase (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Clostridium difficile RepID=T4Z616_CLODI
L3_069_049G1_scaffold_135_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4728..5423
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4P8B4_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31624.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_135_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5601..6491
DNA (891bp) protein (297aa)
Putative exported protein n=15 Tax=Clostridium difficile RepID=T2V784_CLODI
Putative exported protein {ECO:0000313|EMBL:CCL23817.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative exported protein
L3_069_049G1_scaffold_135_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6891..7847)
DNA (957bp) protein (319aa)
Diguanylate cyclase domain protein n=15 Tax=Clostridium difficile RepID=T2V8C8_CLODI
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL23816.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative diguanylate kinase signaling protein
L3_069_049G1_scaffold_135_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8550..9545
DNA (996bp) protein (332aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=61 Tax=Clostridium difficile RepID=T2T944_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG73718.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_049G1_scaffold_135_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9523..10386
DNA (864bp) protein (288aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6B9C0_CLODI
ABC transporter permease {ECO:0000313|EMBL:CKG75902.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter permease
L3_069_049G1_scaffold_135_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10383..11177
DNA (795bp) protein (265aa)
ABC-2 transporter family protein n=36 Tax=Clostridium difficile RepID=T3P6U7_CLODI
ABC-2 transporter family protein {ECO:0000313|EMBL:EQG73736.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter permease
L3_069_049G1_scaffold_135_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11462..12841
DNA (1380bp) protein (460aa)
MatE family protein n=2 Tax=Clostridium difficile RepID=T4PE90_CLODI
MatE family protein {ECO:0000313|EMBL:EQI75644.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
multidrug efflux protein
L3_069_049G1_scaffold_135_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13203..14912
DNA (1710bp) protein (570aa)
Putative Membrane protein n=2 Tax=Clostridium difficile RepID=U4C2U1_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73757.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_069_049G1_scaffold_135_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14927..15799
DNA (873bp) protein (291aa)
ABC transporter, ATP-binding protein SagG family protein n=65 Tax=Clostridium difficile RepID=G6BUY3_CLODI
ABC transporter, ATP-binding protein SagG family protein {ECO:0000313|EMBL:CDS85035.1}; Abc transporter, atp-binding protein {ECO:0000313|EMBL:CDS89547.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter ATP-binding protein
L3_069_049G1_scaffold_135_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15800..16588
DNA (789bp) protein (263aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=G6BUY4_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL24172.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_069_049G1_scaffold_135_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16684..17517)
DNA (834bp) protein (278aa)
Prenyltransferase-like family protein n=2 Tax=Clostridium difficile RepID=T4PDX8_CLODI
Prenyltransferase-like family protein {ECO:0000313|EMBL:EQE59316.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_069_049G1_scaffold_135_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17585..18214)
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PE29_CLODI
conserved hypothetical protein
Domain of uncharacterised function (DUF3786) {ECO:0000313|EMBL:CKG77061.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99974.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_049G1_scaffold_135_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18525..19184
DNA (660bp) protein (220aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4P885_CLODI
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ70217.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_049G1_scaffold_135_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19395..20453
DNA (1059bp) protein (353aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6BAF8_CLODI
hypothetical protein
TIGR00374 family protein {ECO:0000313|EMBL:EQG73774.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_049G1_scaffold_135_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20704..21120
DNA (417bp) protein (139aa)
Formate dehydrogenase h n=6 Tax=Clostridium difficile RepID=C9XRR8_CLODC
fdhF; formate dehydrogenase h
Molybdopterin oxidoreductase family protein {ECO:0000313|EMBL:EQE59318.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_049G1_scaffold_135_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21169..22848
DNA (1680bp) protein (560aa)
Formate dehydrogenase h {ECO:0000313|EMBL:CKG77175.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CKG77175.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
fdhF; Formate dehydrogenase-H (selenocysteine) (EC:1.2.1.2)
Formate dehydrogenase-H (Selenocysteine) n=259 Tax=Clostridium difficile RepID=Q180G2_CLOD6
L3_069_049G1_scaffold_135_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22897..23730
DNA (834bp) protein (278aa)
Protein FdhD homolog n=57 Tax=Clostridium difficile RepID=G6BUZ1_CLODI
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
fdhD; formate dehydrogenase accessory protein
L3_069_049G1_scaffold_135_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23699..23914
DNA (216bp) protein (72aa)
Uncharacterized protein n=27 Tax=Clostridium difficile RepID=T2V6Y5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85053.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_069_049G1_scaffold_135_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23972..24523
DNA (552bp) protein (184aa)
4Fe-4S binding domain protein n=129 Tax=Clostridium difficile RepID=C9XRR5_CLODC
hydN2; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59308.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_049G1_scaffold_135_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24548..25924
DNA (1377bp) protein (459aa)
Iron hydrogenase {ECO:0000313|EMBL:CCK88705.1}; EC=1.12.7.2 {ECO:0000313|EMBL:CCK88705.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Iron hydrogenase n=191 Tax=Clostridium difficile RepID=Q180F8_CLOD6
hydA; hydrogenase
L3_069_049G1_scaffold_135_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25924..26439
DNA (516bp) protein (172aa)
Electron transport protein n=155 Tax=Clostridium difficile RepID=C9XRR3_CLODC
hydN1; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQG73771.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_049G1_scaffold_135_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26517..27800)
DNA (1284bp) protein (428aa)
Sugar (And other) transporter family protein n=142 Tax=Clostridium difficile RepID=T3G0V2_CLODC
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL31589.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_049G1_scaffold_135_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27988..28410
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4P877_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE59300.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_069_049G1_scaffold_135_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28512..29450
DNA (939bp) protein (313aa)
Putative D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CCL31587.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCL31587.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
NAD binding domain of 6-phosphogluconate dehydrogenase family protein n=192 Tax=Clostridium difficile RepID=C9XRR0_CLODC
D-isomer specific 2-hydroxyacid dehydrogenase
L3_069_049G1_scaffold_135_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29636..31660
DNA (2025bp) protein (675aa)
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA ligase n=13 Tax=Clostridium difficile RepID=DNLJ_CLOD6
Displaying items 1-30 of 146 in total

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