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L3_069_049G1_scaffold_484

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_049G1_scaffold_484_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..393)
DNA (393bp) protein (131aa)
MdsC protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RSH2_CLOPF
MdsC protein {ECO:0000313|EMBL:EDT27551.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
MdsC protein
L3_069_049G1_scaffold_484_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(556..978)
DNA (423bp) protein (141aa)
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TTV3_CLOP1
L3_069_049G1_scaffold_484_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1891..2910)
DNA (1020bp) protein (340aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=2 Tax=Clostridiales RepID=U2RG75_9FIRM
L3_069_049G1_scaffold_484_4
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2926..3810)
DNA (885bp) protein (295aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MDS4_9FIRM
L3_069_049G1_scaffold_484_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3823..4932)
DNA (1110bp) protein (370aa)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSA6_9FIRM
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CCY32610.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
DegT/DnrJ/EryC1/StrS aminotransferase
L3_069_049G1_scaffold_484_6
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(4950..5477)
DNA (528bp) protein (176aa)
GCN5-related N-acetyltransferase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LID7_TREBD
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEE16178.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L3_069_049G1_scaffold_484_7
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5456..6418)
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0B6H5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ49888.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
hypothetical protein
L3_069_049G1_scaffold_484_8

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comp(6434..7633)
DNA (1200bp) protein (400aa)
Carbamoyl-phosphate synthase L chain, ATP binding domain protein n=1 Tax=Ruminococcus albus 8 RepID=E9SGC6_RUMAL
Carbamoyl-phosphate synthase L chain, ATP binding domain protein {ECO:0000313|EMBL:AHF24536.1}; TaxID=1393544 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig248.;"
hypothetical protein
L3_069_049G1_scaffold_484_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7880..9307)
DNA (1428bp) protein (476aa)
UPI0003D6990C related cluster n=1 Tax=unknown RepID=UPI0003D6990C
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ETI91187.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
polysaccharide biosynthesis protein
L3_069_049G1_scaffold_484_10
unknown

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comp(9472..9606)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_069_049G1_scaffold_484_11
unknown

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comp(9762..9890)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_069_049G1_scaffold_484_12
Prevotella salivae, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10226..11461)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Dehalobacter sp. DCA RepID=K4KSB6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFV05015.1}; TaxID=888832 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella salivae DSM 15606.;"
L3_069_049G1_scaffold_484_13
unknown

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comp(11463..12719)
DNA (1257bp) protein (419aa)

This feature has no annotations

L3_069_049G1_scaffold_484_14
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(12736..13830)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans 12-1B RepID=H1PQ82_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EHO83557.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;"
hypothetical protein
L3_069_049G1_scaffold_484_15
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13823..14389)
DNA (567bp) protein (189aa)
lipopolysaccharide biosynthesis protein n=1 Tax=Aquimarina agarilytica RepID=UPI0002897B3A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV98319.1}; TaxID=1249480 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
L3_069_049G1_scaffold_484_16
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14389..15378)
DNA (990bp) protein (330aa)
Eps11J n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KEV9_9FIRM
Eps11J {ECO:0000313|EMBL:CDB68551.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_069_049G1_scaffold_484_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15389..16240)
DNA (852bp) protein (284aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA56_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEC90336.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_069_049G1_scaffold_484_18
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16256..16855)
DNA (600bp) protein (200aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EGW37817.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EGW37817.1};; TaxID=913865 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. OT.;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Desulfosporosinus sp. OT RepID=G2FWV2_9FIRM
dTDP-4-dehydrorhamnose 3,5-epimerase
L3_069_049G1_scaffold_484_19
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17219..17893)
DNA (675bp) protein (225aa)
Putative Glycosyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F792_9CLOT
Putative Glycosyltransferase {ECO:0000313|EMBL:CDG00883.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
undecaprenyl-phosphate galactose phosphotransferase
L3_069_049G1_scaffold_484_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17913..18677)
DNA (765bp) protein (255aa)
putative tyrosine-protein phosphatase CapC (EC:3.1.3.48)
Tyrosine-protein phosphatase YwqE {ECO:0000313|EMBL:AGX45200.1}; EC=3.1.3.48 {ECO:0000313|EMBL:AGX45200.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
exopolysaccharide biosynthesis protein n=1 Tax=Clostridium botulinum RepID=UPI00035DFA8E
L3_069_049G1_scaffold_484_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18690..19349)
DNA (660bp) protein (220aa)
tyrosine-protein kinase etk (EC:2.7.10.2)
Capsular exopolysaccharide family {ECO:0000313|EMBL:AGF54953.1}; EC=2.7.10.2 {ECO:0000313|EMBL:AGF54953.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
tyrosine protein kinase n=1 Tax=Clostridium botulinum RepID=UPI000362AE53
L3_069_049G1_scaffold_484_22
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19361..19480)
DNA (120bp) protein (40aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G647_CLOPA
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:ETD71546.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
capsule chain length determinant protein
Displaying 22 items

View Taxonomy