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L3_069_049G1_scaffold_619

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_049G1_scaffold_619_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1996
DNA (1995bp) protein (665aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O123:H11 str. 2009C-3307.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Escherichia coli P0305260.13 RepID=N4EGE2_ECOLX
L3_069_049G1_scaffold_619_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2209..2748
DNA (540bp) protein (180aa)
Heat shock protein C n=480 Tax=Enterobacteriaceae RepID=HTRC_ECOLI
stationary phase growth adaptation protein
Heat shock protein htrC {ECO:0000313|EMBL:EHW09874.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
L3_069_049G1_scaffold_619_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3158..4291)
DNA (1134bp) protein (378aa)
Thiamin biosynthesis, thiazole moiety n=122 Tax=Enterobacteriaceae RepID=J7QAX3_ECOLX
thiamine biosynthesis protein ThiH
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:KDX23594.1}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
L3_069_049G1_scaffold_619_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4288..5058)
DNA (771bp) protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Thiazole synthase n=40 Tax=Enterobacteriaceae RepID=THIG_ECOHS
thiG; thiazole synthase
L3_069_049G1_scaffold_619_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5060..5260)
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=150 Tax=Enterobacteriaceae RepID=A8A791_ECOHS
thiS; sulfur carrier protein ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ENA27094.1}; TaxID=1116113 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE007_MS-11.;"
L3_069_049G1_scaffold_619_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5244..5999)
DNA (756bp) protein (252aa)
Thiamine biosynthesis adenylyltransferase ThiF n=47 Tax=Enterobacteriaceae RepID=B6I5K3_ECOSE
thiamine biosynthesis adenylyltransferase ThiF
Thiazole biosynthesis adenylyltransferase ThiF {ECO:0000313|EMBL:ESD09184.1}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
L3_069_049G1_scaffold_619_7
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5992..6627)
DNA (636bp) protein (212aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=766143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae 225-75.;"
Thiamine-phosphate synthase n=245 Tax=Enterobacteriaceae RepID=THIE_ECOSE
L3_069_049G1_scaffold_619_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6627..8522)
DNA (1896bp) protein (632aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Phosphomethylpyrimidine synthase n=35 Tax=Escherichia coli RepID=B3HI13_ECOLX
thiamine biosynthesis protein ThiC
L3_069_049G1_scaffold_619_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8754..9230)
DNA (477bp) protein (159aa)
Regulator of sigma D n=964 Tax=Enterobacteriaceae RepID=RSD_ECO24
regulator of RpoD, Rsd/AlgQ
Regulator of sigma D {ECO:0000256|HAMAP-Rule:MF_01181, ECO:0000256|SAAS:SAAS00010112}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
L3_069_049G1_scaffold_619_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9325..10098
DNA (774bp) protein (258aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
NADH pyrophosphatase n=510 Tax=cellular organisms RepID=NUDC_ECO24
nudC; NADH pyrophosphatase
L3_069_049G1_scaffold_619_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10138..11202
DNA (1065bp) protein (355aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LAU-EC10.;"
Uroporphyrinogen decarboxylase n=541 Tax=cellular organisms RepID=DCUP_ECO24
L3_069_049G1_scaffold_619_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11212..11883
DNA (672bp) protein (224aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021561.2.;"
Endonuclease V n=1 Tax=Escherichia coli IS5 RepID=V6EQL2_ECOLX
nfi; endonuclease V
L3_069_049G1_scaffold_619_13
Escherichia sp. KTE52, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11926..12516
DNA (591bp) protein (197aa)
Uncharacterized protein YjaG n=506 Tax=Enterobacteriaceae RepID=YJAG_ECOLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOV46022.1}; TaxID=1182659 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE52.;"
L3_069_049G1_scaffold_619_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12703..12912
DNA (210bp) protein (70aa)
DNA-binding protein HU n=1 Tax=Shigella dysenteriae RepID=UPI0003C73C08
DNA-binding protein HU-alpha
DNA-binding protein HU-alpha {ECO:0000313|EMBL:KDY68736.1}; TaxID=1444184 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C3.;"
L3_069_049G1_scaffold_619_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12969..13604
DNA (636bp) protein (212aa)
Uncharacterized protein n=119 Tax=Enterobacteriaceae RepID=C3SI37_ECOLX
yjaH; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOW03608.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L3_069_049G1_scaffold_619_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13606..14031)
DNA (426bp) protein (142aa)
Zinc resistance-associated protein n=658 Tax=Enterobacteriaceae RepID=ZRAP_ECO57
zinc resistance-associated protein
Zinc resistance-associated protein {ECO:0000313|EMBL:EHW09889.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
L3_069_049G1_scaffold_619_17
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14034..14162)
DNA (129bp) protein (43aa)
Uncharacterized protein n=663 Tax=Enterobacteriaceae RepID=B5Z099_ECO5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFW47969.1}; TaxID=941429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae CDC 74-1112.;"
L3_069_049G1_scaffold_619_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14269..15645
DNA (1377bp) protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
Sensor protein n=239 Tax=Escherichia coli RepID=J7R8Q4_ECOLX
sensor protein ZraS
L3_069_049G1_scaffold_619_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15642..16967
DNA (1326bp) protein (442aa)
Response regulator ZraR n=82 Tax=Enterobacteriaceae RepID=B2TWJ1_SHIB3
zraR; transcriptional regulatory protein ZraR
Strain O157 SvETEC scaffold46.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ44550.1}; Transcriptional regulator {ECO:0000313|EMBL:KJW28878.1}; Transcriptional regulatory protein {ECO:0000313|EMBL:AJE58560.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_069_049G1_scaffold_619_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16964..18253)
DNA (1290bp) protein (430aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 85-1.;"
Phosphoribosylamine--glycine ligase n=115 Tax=Escherichia coli RepID=A7ZUM2_ECO24
L3_069_049G1_scaffold_619_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18265..19854)
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=265 Tax=Enterobacteriaceae RepID=PUR9_ECO8A
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
Displaying 21 items

View Taxonomy