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L3_069_061G1_scaffold_203

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_061G1_scaffold_203_1
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..153)
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B56336
YSIRK Gram-positive signal peptide {ECO:0000313|EMBL:ETJ01435.1}; Flags: Fragment;; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
hypothetical protein
L3_069_061G1_scaffold_203_2
Propionimicrobium lymphophilum, Propionimicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(381..815)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B56336
Uncharacterized protein {ECO:0000313|EMBL:EPD33512.1}; TaxID=883161 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionimicrobium.;" source="Propionimicrobium lymphophilum ACS-093-V-SCH5.;"
L3_069_061G1_scaffold_203_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1020..1250
DNA (231bp) protein (77aa)
PTS sugar transporter subunit IIB n=1 Tax=Varibaculum cambriense RepID=UPI0003B723F7
Phosphotransferase system EIIB/cysteine, phosphorylation protein {ECO:0000313|EMBL:ETI83019.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphotransferase system PTS EIIB protein
L3_069_061G1_scaffold_203_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1264..1998
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B6B272
Phosphatase/phosphohexomutase {ECO:0000313|EMBL:ETI83018.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphatase
L3_069_061G1_scaffold_203_5
Actinomyces sp. oral taxon 448, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2025..4202)
DNA (2178bp) protein (726aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=888056 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. oral taxon 448 str. F0400.;"
4-alpha-glucanotransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B4A90E
4-alpha-glucanotransferase
L3_069_061G1_scaffold_203_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4249..5940)
DNA (1692bp) protein (564aa)
ABC transporter ATP-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B4414A
Uncharacterized protein {ECO:0000313|EMBL:ETI83016.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter ATPase
L3_069_061G1_scaffold_203_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6013..6702)
DNA (690bp) protein (230aa)
single-stranded DNA-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3A6CA
Uncharacterized protein {ECO:0000313|EMBL:ETI83015.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
single-strand binding protein
L3_069_061G1_scaffold_203_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7045..7671)
DNA (627bp) protein (209aa)
orn; exoribonuclease II (EC:3.1.-.-)
oligoribonuclease n=1 Tax=Varibaculum cambriense RepID=UPI0003B323B3
Oligoribonuclease {ECO:0000313|EMBL:ETI82991.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_069_061G1_scaffold_203_9
Actinomyces europaeus, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7777..9024
DNA (1248bp) protein (416aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=883069 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces europaeus ACS-120-V-Col10b.;"
threonine dehydratase n=1 Tax=Varibaculum cambriense RepID=UPI0003B58763
threonine dehydratase
L3_069_061G1_scaffold_203_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9164..12274)
DNA (3111bp) protein (1037aa)
membrane protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B5E41B
UPF0182 protein Q618_VCMC00001G0569 {ECO:0000256|HAMAP-Rule:MF_01600}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_069_061G1_scaffold_203_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12391..12999
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B59B02
Uncharacterized protein {ECO:0000313|EMBL:ETI82987.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_069_061G1_scaffold_203_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12968..14059)
DNA (1092bp) protein (364aa)
lon protease S16 C-terminal proteolytic domain protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3AA41
PDZ protein {ECO:0000313|EMBL:ETI82985.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
PDZ/DHR/GLGF domain-containing protein
L3_069_061G1_scaffold_203_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14179..15813
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B51A92
Uncharacterized protein {ECO:0000313|EMBL:ETI82984.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_069_061G1_scaffold_203_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15888..16829
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B2F591
UBA/ThiF-type NAD/FAD binding protein {ECO:0000313|EMBL:ETI82983.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UBA/ThiF-type NAD/FAD binding protein
L3_069_061G1_scaffold_203_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16826..18934)
DNA (2109bp) protein (703aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UvrD/REP helicase n=1 Tax=Varibaculum cambriense RepID=UPI0003B74CDD
UvrD/REP helicase
L3_069_061G1_scaffold_203_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18882..19901)
DNA (1020bp) protein (340aa)
NUDIX hydrolase n=1 Tax=Varibaculum cambriense RepID=UPI0003B563FC
Uncharacterized protein {ECO:0000313|EMBL:ETI82981.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
nudC; NADH pyrophosphatase
L3_069_061G1_scaffold_203_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20108..20842
DNA (735bp) protein (245aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribonuclease PH (EC:2.7.7.56)
ribonuclease PH n=1 Tax=Varibaculum cambriense RepID=UPI0003B38B14
L3_069_061G1_scaffold_203_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20839..21498
DNA (660bp) protein (220aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
nucleoside-triphosphate diphosphatase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3B1CC
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
L3_069_061G1_scaffold_203_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21519..22304)
DNA (786bp) protein (262aa)
beta-lactamase n=1 Tax=Varibaculum cambriense RepID=UPI0003B55B4E
Beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:ETI82978.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
beta-lactamase
L3_069_061G1_scaffold_203_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22301..23116)
DNA (816bp) protein (272aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glutamate racemase n=1 Tax=Varibaculum cambriense RepID=UPI0003B508B4
glutamate racemase
L3_069_061G1_scaffold_203_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23126..23719)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3A22A
Uncharacterized protein {ECO:0000313|EMBL:ETI82976.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L3_069_061G1_scaffold_203_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23716..24012)
DNA (297bp) protein (99aa)
ATP-dependent Clp protease ClpS n=1 Tax=Varibaculum cambriense RepID=UPI0003B78097
ATP-dependent Clp protease adaptor protein ClpS {ECO:0000313|EMBL:ETI82975.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
clpS; ATP-dependent Clp protease adaptor protein ClpS
L3_069_061G1_scaffold_203_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24071..25546
DNA (1476bp) protein (492aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
nicotinate phosphoribosyltransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B5AFD4
L3_069_061G1_scaffold_203_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25543..25881)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B50F9B
Uncharacterized protein {ECO:0000313|EMBL:ETI82973.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L3_069_061G1_scaffold_203_25
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26754..27380)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B79B6B
Uncharacterized protein {ECO:0000313|EMBL:CEH10552.1}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
hypothetical protein
L3_069_061G1_scaffold_203_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27543..28454)
DNA (912bp) protein (304aa)
UPI0003D5D25D related cluster n=1 Tax=unknown RepID=UPI0003D5D25D
Uncharacterized protein {ECO:0000313|EMBL:ETI82038.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tnp3521; IS3521 transposase
L3_069_061G1_scaffold_203_27
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(28451..29335)
DNA (885bp) protein (295aa)
transposase, partial n=1 Tax=Varibaculum cambriense RepID=UPI0003B7580A
Transposase and inactivated derivatives {ECO:0000313|EMBL:CRH60414.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
IS3509a transposase
L3_069_061G1_scaffold_203_28
Actinobaculum massiliense, Actinobaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29461..30294)
DNA (834bp) protein (278aa)
ribonucleoside-triphosphate reductase n=1 Tax=Varibaculum cambriense RepID=UPI0003B78366
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EKU95561.1}; TaxID=883066 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinobaculum.;" source="Actinobaculum massiliense ACS-171-V-Col2.;"
ribonucleoside-triphosphate reductase activating protein
L3_069_061G1_scaffold_203_29
Actinotignum schaalii, Actinotignum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30304..32463)
DNA (2160bp) protein (720aa)
ribonucleoside triphosphate reductase n=1 Tax=Varibaculum cambriense RepID=UPI0003B2FEFD
ribonucleoside-triphosphate reductase
Ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:AIE83305.1}; TaxID=59505 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinotignum.;" source="Actinotignum schaalii.;"
L3_069_061G1_scaffold_203_30
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32895..33374
DNA (480bp) protein (160aa)
glycosidase (EC:3.2.1.20)
Alpha amylase, catalytic domain protein n=2 Tax=Parascardovia denticolens RepID=E6K155_PARDN
Alpha-amylase {ECO:0000313|EMBL:EWS82408.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
Displaying items 1-30 of 42 in total

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