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L3_069_242G1_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_80_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(102..368)
DNA (267bp) protein (89aa)
TnpX site-specific recombinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBT8_9FIRM
TnpX site-specific recombinase {ECO:0000313|EMBL:EDS11063.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_069_242G1_scaffold_80_2
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(325..1650)
DNA (1326bp) protein (442aa)
TnpX site-specific recombinase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1A4_9FIRM
TnpX site-specific recombinase {ECO:0000313|EMBL:CDB03174.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
L3_069_242G1_scaffold_80_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1653..1910)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGJ53917.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_069_242G1_scaffold_80_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2265..2885
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEK5_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDS09788.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
TetR family transcriptional regulator
L3_069_242G1_scaffold_80_5
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2882..3643
DNA (762bp) protein (254aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LWN9_TEPAE
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:CCP25527.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L3_069_242G1_scaffold_80_6
unknown

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4029..4343
DNA (315bp) protein (105aa)

This feature has no annotations

L3_069_242G1_scaffold_80_7
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4379..5356
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=N9Z212_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP19107.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
Putative cell wall binding repeat.
L3_069_242G1_scaffold_80_8
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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5516..6334
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QS57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC39438.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
ATPase (AAA+ superfamily)-like protein
L3_069_242G1_scaffold_80_9
unknown

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6599..6694
DNA (96bp) protein (32aa)

This feature has no annotations

L3_069_242G1_scaffold_80_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7054..9051
DNA (1998bp) protein (666aa)
UvrABC system protein B n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITW2_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
excinuclease ABC, B subunit
L3_069_242G1_scaffold_80_11
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9189..10370
DNA (1182bp) protein (394aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKI9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97734.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Putative cell wall binding repeat.
L3_069_242G1_scaffold_80_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10450..11361)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ITZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43804.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_069_242G1_scaffold_80_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11725..12771
DNA (1047bp) protein (349aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Clostridium sp. CAG:7 RepID=R5IV22_9CLOT
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
heat-inducible transcription repressor HrcA
L3_069_242G1_scaffold_80_14
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12778..13368
DNA (591bp) protein (197aa)
Protein GrpE n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9XD76_9CLOT
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
Molecular chaperone GrpE (heat shock protein)
L3_069_242G1_scaffold_80_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13407..15260
DNA (1854bp) protein (618aa)
Chaperone protein DnaK n=1 Tax=Clostridium sp. CAG:7 RepID=R5J582_9CLOT
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
chaperone protein DnaK
L3_069_242G1_scaffold_80_16
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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15428..16588
DNA (1161bp) protein (387aa)
Chaperone protein DnaJ n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJH7_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
chaperone protein DnaJ
L3_069_242G1_scaffold_80_17
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17110..18018
DNA (909bp) protein (303aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJH6_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEQ56751.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
NAD-dependent epimerase/dehydratase
L3_069_242G1_scaffold_80_18
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17985..18689
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EJH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ56750.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L3_069_242G1_scaffold_80_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18686..19591)
DNA (906bp) protein (302aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.- 4.2.99.18)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IV27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44204.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_069_242G1_scaffold_80_20
unknown

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19865..19993
DNA (129bp) protein (43aa)

This feature has no annotations

L3_069_242G1_scaffold_80_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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20186..21205
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5II41_9CLOT
phenylalanyl-tRNA synthetase subunit alpha
L3_069_242G1_scaffold_80_22
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21238..23670
DNA (2433bp) protein (811aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HCX7_9CLOT
phenylalanyl-tRNA synthetase subunit beta
L3_069_242G1_scaffold_80_23
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24100..25203
DNA (1104bp) protein (368aa)
Transposase, IS605 OrfB family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RP10_9FIRM
Transposase, IS605 OrfB family {ECO:0000313|EMBL:ERK52442.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transposase, IS605 OrfB family, central region
L3_069_242G1_scaffold_80_24
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

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comp(25747..27240)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CJT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX66779.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
transposase, IS30 family
L3_069_242G1_scaffold_80_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27598..28335
DNA (738bp) protein (246aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RMR9_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:ENZ51481.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_069_242G1_scaffold_80_26
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28350..29267
DNA (918bp) protein (306aa)
Iron-sulfur cluster assembly protein n=7 Tax=Clostridium clostridioforme RepID=N9VKA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63208.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_069_242G1_scaffold_80_27
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29291..30271)
DNA (981bp) protein (327aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Blautia sp. CAG:37 RepID=R7JQA3_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDE65758.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
AraC family transcriptional regulator
L3_069_242G1_scaffold_80_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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30443..31849
DNA (1407bp) protein (469aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAZ7_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:EGN40203.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L3_069_242G1_scaffold_80_29
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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31880..33139
DNA (1260bp) protein (420aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HQ81_9FIRM
L3_069_242G1_scaffold_80_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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33154..33978
DNA (825bp) protein (275aa)
L-rhamnulose 1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Rhamnulose-1-phosphate aldolase n=2 Tax=Roseburia RepID=D4KUU7_9FIRM
Displaying items 1-30 of 103 in total

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