ggKbase home page

L3_069_242G1_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_104_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

231..1262
DNA (1032bp) protein (344aa)
Predicted membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIJ0_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ77865.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L3_069_242G1_scaffold_104_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1477..1863
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQ06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77864.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_069_242G1_scaffold_104_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2146..2940
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77863.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_069_242G1_scaffold_104_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2973..3596
DNA (624bp) protein (208aa)
HNH endonuclease n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAW5_9FIRM
HNH endonuclease {ECO:0000313|EMBL:CCZ77862.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
HNH endonuclease.
L3_069_242G1_scaffold_104_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3697..4140
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V390_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77861.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_069_242G1_scaffold_104_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4145..4414
DNA (270bp) protein (90aa)
Putative efflux protein MATE family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UII6_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCZ77860.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative efflux protein, MATE family
L3_069_242G1_scaffold_104_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4417..5463
DNA (1047bp) protein (349aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NJC1_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCY97416.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
putative efflux protein, MATE family
L3_069_242G1_scaffold_104_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5531..6430
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77858.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_069_242G1_scaffold_104_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6494..6682)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77857.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_069_242G1_scaffold_104_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6700..7887)
DNA (1188bp) protein (396aa)
Sodium/glutamate symporter n=1 Tax=Roseburia sp. CAG:18 RepID=R5V387_9FIRM
Sodium/glutamate symporter {ECO:0000313|EMBL:CCZ77856.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sodium/glutamate symporter
L3_069_242G1_scaffold_104_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7908..8861)
DNA (954bp) protein (318aa)
TRAP transporter solute receptor TAXI family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UII0_9FIRM
TRAP transporter solute receptor TAXI family {ECO:0000313|EMBL:CCZ77855.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
TRAP transporter solute receptor, TAXI family
L3_069_242G1_scaffold_104_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9415..10827
DNA (1413bp) protein (471aa)
anthranilate synthase, component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPZ5_9FIRM
Anthranilate synthase component I {ECO:0000313|EMBL:CCZ77854.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_069_242G1_scaffold_104_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10824..11393
DNA (570bp) protein (190aa)
Anthranilate synthase component II n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHW3_9FIRM
Anthranilate synthase component II {ECO:0000313|EMBL:CCZ77853.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
anthranilate synthase component II
L3_069_242G1_scaffold_104_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11487..12272
DNA (786bp) protein (262aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAV3_9FIRM
L3_069_242G1_scaffold_104_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12269..12934
DNA (666bp) protein (222aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V384_9FIRM
hypothetical protein
L3_069_242G1_scaffold_104_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12931..14118
DNA (1188bp) protein (396aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIH7_9FIRM
L3_069_242G1_scaffold_104_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14135..14929
DNA (795bp) protein (265aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPZ1_9FIRM
L3_069_242G1_scaffold_104_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14963..15973
DNA (1011bp) protein (337aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YBA0_9FIRM
L3_069_242G1_scaffold_104_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16168..18093
DNA (1926bp) protein (642aa)
pullulanase, type I (EC:3.2.1.41)
Pullulanase type I n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAU6_9FIRM
Pullulanase type I {ECO:0000313|EMBL:CCZ77842.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_069_242G1_scaffold_104_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18074..19333)
DNA (1260bp) protein (420aa)
Chloride channel protein EriC n=1 Tax=Roseburia sp. CAG:18 RepID=R5V376_9FIRM
Chloride channel protein EriC {ECO:0000313|EMBL:CCZ77841.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Chloride channel protein EriC
L3_069_242G1_scaffold_104_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19448..21016
DNA (1569bp) protein (523aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIG8_9FIRM
L3_069_242G1_scaffold_104_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21110..22609
DNA (1500bp) protein (500aa)
Stage IV sporulation protein A n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPY2_9FIRM
Stage IV sporulation protein A {ECO:0000313|EMBL:CCZ77839.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
stage IV sporulation protein A
L3_069_242G1_scaffold_104_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22723..23559
DNA (837bp) protein (279aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Purine nucleoside phosphorylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHU6_9FIRM
inosine guanosine and xanthosine phosphorylase family protein
L3_069_242G1_scaffold_104_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23550..24305
DNA (756bp) protein (252aa)
Metal dependent hydrolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAU0_9FIRM
Metal dependent hydrolase {ECO:0000313|EMBL:CCZ77837.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
metal dependent hydrolase
L3_069_242G1_scaffold_104_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24378..24515
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V371_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77836.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_069_242G1_scaffold_104_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24533..27193
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIG3_9FIRM
L3_069_242G1_scaffold_104_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27356..28654
DNA (1299bp) protein (433aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPX7_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCZ77834.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_069_242G1_scaffold_104_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28668..30401
DNA (1734bp) protein (578aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHU2_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CCZ77833.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Methyl-accepting chemotaxis protein
L3_069_242G1_scaffold_104_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30542..30718
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=11 Tax=Clostridiales RepID=RS21_EUBR3
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_069_242G1_scaffold_104_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30786..32516
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V365_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77831.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type multidrug transport system, ATPase and permease components
Displaying items 1-30 of 98 in total

View Taxonomy