ggKbase home page

L3_069_242G1_scaffold_256

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_256_1
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(5..934)
DNA (930bp) protein (310aa)
Phosphomannose isomerase-like protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EJX2_9FIRM
Phosphomannose isomerase-like protein {ECO:0000313|EMBL:CCX92965.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
phosphomannose isomerase-like protein
L3_069_242G1_scaffold_256_2
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1266..2093)
DNA (828bp) protein (276aa)
Putative DeoR family transcriptional regulator n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR76_OSCVS
putative DeoR family transcriptional regulator
Tax=BJP_IG2157_Clostridiales_52_13
L3_069_242G1_scaffold_256_3
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2132..3088)
DNA (957bp) protein (319aa)
Kinase, PfkB family n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y824_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:ESL03836.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
PfkB domain-containing protein
L3_069_242G1_scaffold_256_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3258..3944)
DNA (687bp) protein (229aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transaldolase (EC:2.2.1.2)
Transaldolase family protein n=1 Tax=Clostridium sp. D5 RepID=F0YZE6_9CLOT
L3_069_242G1_scaffold_256_5
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4003..6468)
DNA (2466bp) protein (822aa)
Putative pyruvate dehydrogenase E1 component alpha subunit/beta subunit n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR75_OSCVS
putative pyruvate dehydrogenase E1 component alpha subunit/beta subunit
Putative pyruvate dehydrogenase E1 component alpha subunit/beta subunit {ECO:0000313|EMBL:BAK99898.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_069_242G1_scaffold_256_6
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6496..7863)
DNA (1368bp) protein (456aa)
lpd; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR74_OSCVS
L3_069_242G1_scaffold_256_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7876..9099)
DNA (1224bp) protein (408aa)
pdhC; dihydrolipoamide acetyltransferase (EC:2.3.1.12)
Dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:BAK99895.1}; EC=2.3.1.12 {ECO:0000313|EMBL:BAK99895.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Dihydrolipoamide acetyltransferase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KR72_OSCVS
L3_069_242G1_scaffold_256_8
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9420..11789
DNA (2370bp) protein (790aa)
Pyruvate formate-lyase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K6E2_CLOPA
pyruvate formate-lyase
Pyruvate formate-lyase {ECO:0000313|EMBL:AGK98762.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_069_242G1_scaffold_256_9
Peptostreptococcaceae bacterium CM2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11803..12693
DNA (891bp) protein (297aa)
glycerol dehydratase, cobalamin-independent, small subunit (EC:1.97.1.4 4.2.1.30)
Glycyl-radical enzyme activating protein n=2 Tax=unclassified Eubacteriaceae RepID=J5WPI4_9FIRM
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:EHL17575.1}; TaxID=796939 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM2.;"
L3_069_242G1_scaffold_256_10
Bacillus sp. X1(2014), Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12767..13426
DNA (660bp) protein (220aa)
transaldolase (EC:2.2.1.2)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494, ECO:0000313|EMBL:AIM16430.1};; TaxID=1565991 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. X1(2014).;"
transaldolase n=1 Tax=Bacillus sp. AP8 RepID=UPI00030ABD69
L3_069_242G1_scaffold_256_11
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13495..14538
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75074.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_069_242G1_scaffold_256_12
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14628..15092
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75073.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_069_242G1_scaffold_256_13
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15109..16611
DNA (1503bp) protein (501aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC32_SPISS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK79912.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
L3_069_242G1_scaffold_256_14
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

16755..17597
DNA (843bp) protein (281aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RKV0_MOOTA
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69400.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
L3_069_242G1_scaffold_256_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17728..18153)
DNA (426bp) protein (142aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acoL; acetoin dehydrogenase E3 component (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9D6_9FIRM
L3_069_242G1_scaffold_256_16
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18140..18697)
DNA (558bp) protein (186aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acoL; acetoin dehydrogenase E3 component (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7I3_9FIRM
L3_069_242G1_scaffold_256_17
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18715..19215)
DNA (501bp) protein (167aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acoL; acetoin dehydrogenase E3 component (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7I3_9FIRM
L3_069_242G1_scaffold_256_18
unknown

Not on your lists

19311..19706
DNA (396bp) protein (132aa)

This feature has no annotations

L3_069_242G1_scaffold_256_19
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19561..20262)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67020.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_069_242G1_scaffold_256_20
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20259..20435)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67020.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_069_242G1_scaffold_256_21
unknown

Not on your lists

20819..21025
DNA (207bp) protein (69aa)

This feature has no annotations

L3_069_242G1_scaffold_256_22
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20962..22545)
DNA (1584bp) protein (528aa)
Transcriptional regulator, AraC family n=2 Tax=Oscillibacter RepID=U2Q2F6_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK67455.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_069_242G1_scaffold_256_23
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22548..24314)
DNA (1767bp) protein (589aa)
HAMP domain protein n=2 Tax=Oscillibacter RepID=U2QKB8_9FIRM
HAMP domain protein {ECO:0000313|EMBL:ERK67456.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
sensor with HAMP domain
L3_069_242G1_scaffold_256_24
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24502..25491)
DNA (990bp) protein (330aa)
Putative ribose ABC transporter permease protein n=2 Tax=Oscillibacter RepID=U2S295_9FIRM
Putative ribose ABC transporter permease protein {ECO:0000313|EMBL:ERK67457.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
rbsC; ribose ABC transporter permease
L3_069_242G1_scaffold_256_25
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25504..26997)
DNA (1494bp) protein (498aa)
Putative ribose transport ATP-binding protein rbsa n=2 Tax=Oscillibacter RepID=U2RTN9_9FIRM
Putative ribose transport ATP-binding protein rbsa {ECO:0000313|EMBL:ERK67458.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter
L3_069_242G1_scaffold_256_26
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27073..28185)
DNA (1113bp) protein (371aa)
Sugar-binding domain protein n=2 Tax=Oscillibacter RepID=U2QL33_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:ERK67459.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
D-ribose transporter subunit RbsB
L3_069_242G1_scaffold_256_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28227..28955)
DNA (729bp) protein (243aa)
Putative cyclase n=2 Tax=Oscillibacter RepID=U2Q2G3_9FIRM
Putative cyclase {ECO:0000313|EMBL:ERK67460.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_069_242G1_scaffold_256_28
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29209..30252)
DNA (1044bp) protein (348aa)
GroES-like protein n=2 Tax=Oscillibacter RepID=U2QKC3_9FIRM
GroES-like protein {ECO:0000313|EMBL:ERK67462.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
alcohol dehydrogenase GroES domain-containing protein
L3_069_242G1_scaffold_256_29
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30258..31088)
DNA (831bp) protein (277aa)
fba; fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Putative tagatose-bisphosphate aldolase n=2 Tax=Oscillibacter RepID=U2S2A1_9FIRM
Putative tagatose-bisphosphate aldolase {ECO:0000313|EMBL:ERK67463.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_069_242G1_scaffold_256_30
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31093..31989)
DNA (897bp) protein (299aa)
Kinase, PfkB family n=2 Tax=Oscillibacter RepID=U2RFZ6_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:ERK67464.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
PfkB family carbohydrate kinase
Displaying items 1-30 of 50 in total

View Taxonomy