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L3_069_242G1_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_258_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

478..669
DNA (192bp) protein (64aa)
Putative transposase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM79_BIFBS
IS1557 family transposase
Putative transposase {ECO:0000313|EMBL:CDB23194.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_242G1_scaffold_258_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

736..1743
DNA (1008bp) protein (336aa)
IS1557 family transposase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1G3_BIFBP
Transposase {ECO:0000313|EMBL:BAQ98064.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
IS1557 family transposase
L3_069_242G1_scaffold_258_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1697..2440)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRG1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82306.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_069_242G1_scaffold_258_4
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2437..2778)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A8B9_BIFAD
transposase
Transposase {ECO:0000313|EMBL:AIZ14466.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L3_069_242G1_scaffold_258_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3011..3796)
DNA (786bp) protein (262aa)
Bile salt hydrolase {ECO:0000313|EMBL:AAT11512.1}; Cbh Choloylglycine hydrolase {ECO:0000313|EMBL:KFI42912.1}; EC=3.5.1.24 {ECO:0000313|EMBL:KFI42912.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Choloylglycine hydrolase n=5 Tax=Bifidobacterium RepID=K2HTC3_BIFBI
cbh; Choloylglycine hydrolase
L3_069_242G1_scaffold_258_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3969..4295)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM76_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53083.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_242G1_scaffold_258_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4554..5426)
DNA (873bp) protein (291aa)
Putative hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:KFI42910.1}; EC=3.6.1.29 {ECO:0000313|EMBL:KFI42910.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Hydrolase, carbon-nitrogen family n=2 Tax=Bifidobacterium RepID=U2CCQ2_BIFBI
carbon-nitrogen hydrolase
L3_069_242G1_scaffold_258_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5497..6363)
DNA (867bp) protein (289aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HAY3_9BIFI
ymeB; ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04443.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_242G1_scaffold_258_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6515..7765)
DNA (1251bp) protein (417aa)
Glycosyltransferase n=3 Tax=Bifidobacterium RepID=K2HW53_BIFBI
Glycosyltransferase {ECO:0000313|EMBL:EKE50647.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
glgA; putative glycosyl transferase
L3_069_242G1_scaffold_258_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7915..8388)
DNA (474bp) protein (158aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WHS8_BIFBI
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42907.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_242G1_scaffold_258_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8736..10268)
DNA (1533bp) protein (511aa)
Glutamate synthase [NADPH] small chain n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM71_BIFBS
Glutamate synthase [NADPH] small chain {ECO:0000313|EMBL:ADO53078.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
gltD; glutamate synthase [NADPH] small chain
L3_069_242G1_scaffold_258_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10270..14751)
DNA (4482bp) protein (1494aa)
Glutamate synthase [NADPH], large subunit {ECO:0000313|EMBL:EFR50236.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EFR50236.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
gltB; ferredoxin-dependent glutamate synthase (EC:1.4.7.1)
Glutamate synthase [NADPH], large subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9E4_BIFBI
L3_069_242G1_scaffold_258_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15121..17211)
DNA (2091bp) protein (697aa)
Translation elongation factor n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1F3_BIFBP
translation elongation factor
Translation elongation factor {ECO:0000313|EMBL:CDB23341.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_242G1_scaffold_258_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17408..18976)
DNA (1569bp) protein (523aa)
aminotransferase (EC:2.6.1.1)
Aminotransferase n=2 Tax=Bifidobacterium bifidum RepID=E4P1F2_BIFBP
Aminotransferase {ECO:0000313|EMBL:CDB23338.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_242G1_scaffold_258_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19294..19434
DNA (141bp) protein (47aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2HTC9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53074.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_242G1_scaffold_258_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19491..20885)
DNA (1395bp) protein (465aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM66_BIFBS
hemN; oxygen-independent coproporphyrinogen III oxidase
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ADO53073.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_242G1_scaffold_258_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20900..22780)
DNA (1881bp) protein (627aa)
lepA; GTP-binding protein LepA (EC:2.7.7.4)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Elongation factor 4 n=2 Tax=Bifidobacterium bifidum RepID=E3EM65_BIFBS
L3_069_242G1_scaffold_258_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


22989..23249
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=7 Tax=Bifidobacterium RepID=E3EM64_BIFBS
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_242G1_scaffold_258_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23387..24145)
DNA (759bp) protein (253aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=E4V9D7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82323.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_242G1_scaffold_258_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24383..24826)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MEN3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98046.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_069_242G1_scaffold_258_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24849..25121)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1E6_BIFBP
putative phosphoesterase or phosphohydrolase
Uncharacterized protein {ECO:0000313|EMBL:KFI42896.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_242G1_scaffold_258_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25324..26451)
DNA (1128bp) protein (376aa)
ilvE; branched-chain amino acid aminotransferase IlvE (EC:2.6.1.42)
IlvE Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KFI42895.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KFI42895.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Branched-chain amino acid aminotransferase n=3 Tax=Bifidobacterium RepID=K2H9P8_BIFBI
L3_069_242G1_scaffold_258_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(26667..27293)
DNA (627bp) protein (209aa)
50S ribosomal protein L25 n=3 Tax=Bifidobacterium bifidum RepID=E4P1E4_BIFBP
rplY; 50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_069_242G1_scaffold_258_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27608..28600
DNA (993bp) protein (331aa)
Alpha/beta hydrolase n=2 Tax=Bifidobacterium bifidum RepID=E4P1E3_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53066.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_242G1_scaffold_258_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28740..30185)
DNA (1446bp) protein (482aa)
pntB; NAD(P) transhydrogenase subunit beta (EC:1.6.1.2)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
NAD(P) transhydrogenase subunit beta n=6 Tax=Bifidobacterium RepID=E4P1E2_BIFBP
L3_069_242G1_scaffold_258_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30185..30499)
DNA (315bp) protein (105aa)
pntAB; NAD(P) transhydrogenase subunit alpha part 2 (EC:1.6.1.2)
NAD(P) transhydrogenase alpha2 subunit n=7 Tax=Bifidobacterium RepID=E3EM57_BIFBS
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:EKF15071.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_242G1_scaffold_258_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30503..31642)
DNA (1140bp) protein (380aa)
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha subunit n=8 Tax=Bifidobacterium RepID=E3EM56_BIFBS
PntA1 NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:CDB23312.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_242G1_scaffold_258_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31862..33898
DNA (2037bp) protein (679aa)
fadD; long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Putative long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AFL04423.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AFL04423.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative long-chain-fatty-acid--CoA ligase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHR0_BIFBI
L3_069_242G1_scaffold_258_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33999..35009)
DNA (1011bp) protein (337aa)
GTPase Era n=6 Tax=Bifidobacterium RepID=I3WHQ9_BIFBI
era; GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_242G1_scaffold_258_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35058..36476)
DNA (1419bp) protein (473aa)
CBS domain protein n=4 Tax=Bifidobacterium RepID=E4V9C7_BIFBI
CBS domain protein {ECO:0000313|EMBL:EFR50219.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
Displaying items 1-30 of 56 in total

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