ggKbase home page

L3_069_242G1_scaffold_270

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_270_1
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

566..1963
DNA (1398bp) protein (466aa)
Magnesium transporter n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QA80_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Mg2+ transporter (mgtE)
L3_069_242G1_scaffold_270_2
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2020..2394)
DNA (375bp) protein (125aa)
GGDEF domain-containing protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZQU0_9FIRM
GGDEF domain-containing protein {ECO:0000313|EMBL:CDA31307.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
FOG: GGDEF domain
L3_069_242G1_scaffold_270_3
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2450..4096)
DNA (1647bp) protein (549aa)
HDIG domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QA33_9FIRM
HDIG domain protein {ECO:0000313|EMBL:EKY24824.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG
L3_069_242G1_scaffold_270_4
unknown

Not on your lists

4360..5361
DNA (1002bp) protein (334aa)
K+-dependent Na+/Ca+ exchanger related-protein n=3 Tax=Clostridiales RepID=D4MZ19_9FIRM
K+-dependent Na+/Ca+ exchanger related-protein
K+-dependent Na+/Ca+ exchanger related-protein {ECO:0000313|EMBL:CBL37864.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_069_242G1_scaffold_270_5
unknown

Not on your lists

5426..6415
DNA (990bp) protein (330aa)
Predicted dehydrogenases and related proteins n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4MZ18_9FIRM
Predicted dehydrogenases and related proteins
Predicted dehydrogenases and related proteins {ECO:0000313|EMBL:CBL37863.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_069_242G1_scaffold_270_6
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6412..7227
DNA (816bp) protein (272aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QA76_9FIRM
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type {ECO:0000313|EMBL:EKY24821.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_069_242G1_scaffold_270_7
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7251..8642
DNA (1392bp) protein (464aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=3 Tax=Clostridiales RepID=D4MZ16_9FIRM
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CDA31313.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_069_242G1_scaffold_270_8
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8661..10046
DNA (1386bp) protein (462aa)
Endopeptidase Clp ATP-binding regulatory subunit (ClpX) n=3 Tax=Clostridiales RepID=D4MZ15_9FIRM
endopeptidase Clp ATP-binding regulatory subunit (clpX)
Endopeptidase Clp ATP-binding regulatory subunit (ClpX) {ECO:0000313|EMBL:CDA31314.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_069_242G1_scaffold_270_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10152..11177)
DNA (1026bp) protein (342aa)
branched-chain amino acid aminotransferase, group II (EC:2.6.1.42)
Branched-chain amino acid aminotransferase, group II n=4 Tax=Clostridiales RepID=D4MZ14_9FIRM
Branched-chain amino acid aminotransferase group II {ECO:0000313|EMBL:CDA31315.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_069_242G1_scaffold_270_10
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11296..12354)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=L1QB50_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKY24817.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_069_242G1_scaffold_270_11
unknown

Not on your lists

12581..14536
DNA (1956bp) protein (652aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854, ECO:0000313|EMBL:CBL37857.1};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=3 Tax=Clostridiales RepID=D4MZ12_9FIRM
L3_069_242G1_scaffold_270_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14621..16297
DNA (1677bp) protein (559aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EDS23359.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDS23359.1};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Peptidase, S8/S53 family n=1 Tax=Clostridium sp. SS2/1 RepID=B0NWJ6_9CLOT
Subtilisin-like serine proteases
L3_069_242G1_scaffold_270_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16313..17629)
DNA (1317bp) protein (439aa)
Na+-driven multidrug efflux pump n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z3M4_9FIRM
Na+-driven multidrug efflux pump {ECO:0000313|EMBL:CDA31324.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Na+-driven multidrug efflux pump
L3_069_242G1_scaffold_270_14
unknown

Not on your lists

17765..18214
DNA (450bp) protein (150aa)
Transcriptional regulator, BadM/Rrf2 family n=2 Tax=Clostridiales RepID=D4MZ09_9FIRM
transcriptional regulator, BadM/Rrf2 family
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CBL37854.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_069_242G1_scaffold_270_15
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18226..19410
DNA (1185bp) protein (395aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Cysteine desulfurase NifS n=4 Tax=Clostridiales RepID=D4MZ08_9FIRM
L3_069_242G1_scaffold_270_16
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19485..19922
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=5 Tax=Clostridiales RepID=D4MZ07_9FIRM
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:CDA31327.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_069_242G1_scaffold_270_17
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19956..21023
DNA (1068bp) protein (356aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLB4_9FIRM
L3_069_242G1_scaffold_270_18
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21057..21980
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NWJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS23353.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Predicted membrane protein
L3_069_242G1_scaffold_270_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22254..22910
DNA (657bp) protein (219aa)
Response regulator receiver domain-containing protein n=3 Tax=Lachnospiraceae RepID=E5VLB2_9FIRM
Putative transcriptional regulatory protein ResD {ECO:0000313|EMBL:EKY24808.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
two component transcriptional regulator
L3_069_242G1_scaffold_270_20
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22949..24391
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Hsp90-like protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZB48_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_069_242G1_scaffold_270_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24544..25323
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NWI6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA31332.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
hypothetical protein
L3_069_242G1_scaffold_270_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25333..25938
DNA (606bp) protein (202aa)
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Imidazole glycerol phosphate synthase subunit HisH n=3 Tax=Clostridiales RepID=D4MZ03_9FIRM
L3_069_242G1_scaffold_270_23
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25951..26712
DNA (762bp) protein (254aa)
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Clostridiales RepID=D4MZ02_9FIRM
L3_069_242G1_scaffold_270_24
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26794..27099
DNA (306bp) protein (102aa)
YcfA-like protein n=3 Tax=Clostridiales RepID=D4MZ01_9FIRM
YcfA-like protein.
Toxin-antitoxin system, toxin component, HicA family {ECO:0000313|EMBL:EKY24802.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_069_242G1_scaffold_270_25
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27083..27445
DNA (363bp) protein (121aa)
Uncharacterized conserved protein n=5 Tax=Clostridiales RepID=D4MZ00_9FIRM
hypothetical protein
HicB family protein {ECO:0000313|EMBL:EFV16417.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_069_242G1_scaffold_270_26
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27629..28063
DNA (435bp) protein (145aa)
Oxidoreductase n=2 Tax=Lachnospiraceae RepID=L1QA16_9FIRM
Oxidoreductase {ECO:0000313|EMBL:EKY24799.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
C_GCAxxG_C_C family probable redox protein
L3_069_242G1_scaffold_270_27
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28182..32399)
DNA (4218bp) protein (1406aa)
BadF/BadG/BcrA/BcrD ATPase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLA4_9FIRM
BadF/BadG/BcrA/BcrD ATPase {ECO:0000313|EMBL:EFV16415.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
CoA-substrate-specific enzyme activase, putative
L3_069_242G1_scaffold_270_28
unknown

Not on your lists

32560..32961
DNA (402bp) protein (134aa)
LysM domain n=5 Tax=Clostridiales RepID=D4MYZ6_9FIRM
LysM domain.
LysM domain {ECO:0000313|EMBL:CBL37841.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_069_242G1_scaffold_270_29
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33086..34018
DNA (933bp) protein (311aa)
Mg2+ and Co2+ transporters n=5 Tax=Clostridiales RepID=D4MYZ5_9FIRM
Mg2+ and Co2+ transporters
CorA-like Mg2+ transporter {ECO:0000313|EMBL:CDA31340.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_069_242G1_scaffold_270_30
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34044..34913
DNA (870bp) protein (290aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=L1QAU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16412.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
hypothetical protein
Displaying items 1-30 of 53 in total

View Taxonomy