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L3_069_242G1_scaffold_322

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_322_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..281
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=root RepID=H1B510_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBK98823.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_069_242G1_scaffold_322_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

295..831
DNA (537bp) protein (179aa)
Restriction endonuclease S subunits (EC:3.1.21.3)
Restriction endonuclease S subunits {ECO:0000313|EMBL:CBK98822.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CBK98822.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Restriction endonuclease S subunits n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXS3_9FIRM
L3_069_242G1_scaffold_322_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(828..1037)
DNA (210bp) protein (70aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8Q6_9FIRM
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EEU95761.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
truncated endonuclease
L3_069_242G1_scaffold_322_4
BJP_IG2158_Nitrospirales_45_240, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1500..1979
DNA (480bp) protein (160aa)
Tax=BJP_IG2158_Nitrospirales_45_240
L3_069_242G1_scaffold_322_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2023..5103
DNA (3081bp) protein (1027aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EFB76229.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EFB76229.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNU4_9FIRM
L3_069_242G1_scaffold_322_6
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5181..6047)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H2K6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27716.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_069_242G1_scaffold_322_7
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6037..9111)
DNA (3075bp) protein (1025aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QYC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62564.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_069_242G1_scaffold_322_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9227..9436
DNA (210bp) protein (70aa)
DNA binding domain, excisionase family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGM0_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EDS09399.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA binding domain, excisionase family
L3_069_242G1_scaffold_322_9
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9433..9876
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09400.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Sugar-specific transcriptional regulator TrmB.
L3_069_242G1_scaffold_322_10
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9857..10348
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09401.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_069_242G1_scaffold_322_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10514..10924
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X939_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48008.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_322_12
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10921..12879
DNA (1959bp) protein (653aa)
Sel1 repeat protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGM6_9FIRM
Sel1 repeat protein {ECO:0000313|EMBL:EDS09405.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_069_242G1_scaffold_322_13
unknown

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comp(12949..13416)
DNA (468bp) protein (156aa)

This feature has no annotations

L3_069_242G1_scaffold_322_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13611..13934
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2S9N7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK65727.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_069_242G1_scaffold_322_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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13940..15148
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27664.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative site-specific recombinase
L3_069_242G1_scaffold_322_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15141..16721
DNA (1581bp) protein (527aa)
Site-specific recombinase, phage integrase family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGN2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDS09411.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Site-specific recombinase XerD
L3_069_242G1_scaffold_322_17
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16788..18089)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09412.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Predicted ATPase (AAA+ superfamily)
L3_069_242G1_scaffold_322_18
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18456..19334
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KDG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS44271.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
hypothetical protein
L3_069_242G1_scaffold_322_19
unknown

Not on your lists

19705..19863
DNA (159bp) protein (53aa)

This feature has no annotations

L3_069_242G1_scaffold_322_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19950..21425)
DNA (1476bp) protein (492aa)
Resolvase protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BJ58_9CLOT
Resolvase protein {ECO:0000313|EMBL:ERI71858.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Resolvase domain-containing protein
L3_069_242G1_scaffold_322_21
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21422..21799)
DNA (378bp) protein (126aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CRH6_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI71857.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
toxin-antitoxin system
L3_069_242G1_scaffold_322_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22521..22892
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BI16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71855.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_069_242G1_scaffold_322_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23073..23390
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B121_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71854.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_069_242G1_scaffold_322_24
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23548..24513
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CRH2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71852.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Putative viral replication protein.
L3_069_242G1_scaffold_322_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24497..25807
DNA (1311bp) protein (437aa)
FtsK/SpoIIIE family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CX48_9CLOT
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:ERI71851.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
DNA segregation ATPase FtsK/SpoIIIE and related proteins
L3_069_242G1_scaffold_322_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25826..26002
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BI11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71850.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_069_242G1_scaffold_322_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26135..27952
DNA (1818bp) protein (606aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B116_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI71849.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
XRE family transcriptional regulator
L3_069_242G1_scaffold_322_28
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28843..31305)
DNA (2463bp) protein (821aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T9T3_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:CDC68985.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
L3_069_242G1_scaffold_322_29
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31341..31850)
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2SAB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62872.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_069_242G1_scaffold_322_30
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31924..32376)
DNA (453bp) protein (151aa)
Putative transcriptional regulator CtsR n=2 Tax=Oscillibacter RepID=U2R1Y2_9FIRM
Putative transcriptional regulator CtsR {ECO:0000313|EMBL:ERK62871.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ctsR; transcriptional regulator CtsR
Displaying items 1-30 of 53 in total

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