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L3_069_242G1_scaffold_584

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_584_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..180)
DNA (180bp) protein (60aa)
PfkB family sugar kinase {ECO:0000313|EMBL:KFI73417.1}; EC=2.7.1.4 {ECO:0000313|EMBL:KFI73417.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Sugar kinases, ribokinase family n=4 Tax=Bifidobacterium longum RepID=D6DCS5_BIFLN
sugar kinase
L3_069_242G1_scaffold_584_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(253..1467)
DNA (1215bp) protein (405aa)
ROK family protein {ECO:0000313|EMBL:CCK35226.1}; EC=2.7.1.55 {ECO:0000313|EMBL:CCK35226.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
ROK family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I3S7_BIFLN
ROK family protein
L3_069_242G1_scaffold_584_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1693..2607
DNA (915bp) protein (305aa)
ROK family protein n=2 Tax=Bifidobacterium RepID=C2GYA3_BIFLN
ROK family protein {ECO:0000313|EMBL:EEI79883.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
nagc-type transcriptional regulator
L3_069_242G1_scaffold_584_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2747..3871)
DNA (1125bp) protein (375aa)
NagC-type transcriptional regulator n=7 Tax=Bifidobacterium RepID=E4R1Z5_BIFLM
nagc-type transcriptional regulator
ROK family protein {ECO:0000313|EMBL:EEI79884.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_069_242G1_scaffold_584_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4209..5021
DNA (813bp) protein (271aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Glucosamine-6-phosphate deaminase n=13 Tax=Bifidobacterium RepID=NAGB_BIFLO
glucosamine-6-phosphate deaminase
L3_069_242G1_scaffold_584_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5077..6360
DNA (1284bp) protein (428aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I1R4_BIFLN
nagA; glucosamine-6-phosphate isomerase
L3_069_242G1_scaffold_584_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6640..8274
DNA (1635bp) protein (545aa)
ABC-type dipeptide transport system periplasmic component n=3 Tax=Bifidobacterium RepID=B3DQR1_BIFLD
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:ACD97657.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
ddpA1; ddpa1
L3_069_242G1_scaffold_584_8
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8438..9529
DNA (1092bp) protein (364aa)
Probable permease of ABC transporter for peptides n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MW87_9BIFI
Probable permease of ABC transporter for peptides {ECO:0000313|EMBL:CCY95708.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
ABC transporter permease
L3_069_242G1_scaffold_584_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9531..10700
DNA (1170bp) protein (390aa)
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components n=14 Tax=Bifidobacterium RepID=D6DCT1_BIFLN
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EIJ24628.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_069_242G1_scaffold_584_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10704..12413
DNA (1710bp) protein (570aa)
ABC-type peptide transport system ATPase component n=15 Tax=Bifidobacterium RepID=B3DQR4_BIFLD
Peptide ABC transporter ATPase {ECO:0000313|EMBL:KEY25602.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
ABC transporter ATP-binding protein
L3_069_242G1_scaffold_584_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12463..12984)
DNA (522bp) protein (174aa)
Uncharacterized protein n=10 Tax=Bifidobacterium RepID=Q8G4M9_BIFLO
hypothetical protein
NUDIX domain protein {ECO:0000313|EMBL:EIJ30718.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_069_242G1_scaffold_584_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13033..14628)
DNA (1596bp) protein (532aa)
Aminopeptidase P {ECO:0000313|EMBL:ESV33804.1}; EC=3.4.11.9 {ECO:0000313|EMBL:ESV33804.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Aminopeptidase P n=1 Tax=Bifidobacterium longum E18 RepID=V6Y1R1_BIFLN
Xaa-Pro aminopeptidase
L3_069_242G1_scaffold_584_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14932..15537)
DNA (606bp) protein (202aa)
Uncharacterized protein n=6 Tax=Bifidobacterium longum RepID=I3ATH6_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ24632.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_069_242G1_scaffold_584_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17002..18633
DNA (1632bp) protein (544aa)
Folylpolyglutamate synthase n=2 Tax=Bifidobacterium longum RepID=B3DQR8_BIFLD
Folylpolyglutamate synthase {ECO:0000313|EMBL:ACD97664.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
folC; folylpolyglutamate synthase
L3_069_242G1_scaffold_584_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18694..22371
DNA (3678bp) protein (1226aa)
Chromosome partition protein Smc n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DQR9_BIFLD
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
smc; chromosome segregation ATPase
L3_069_242G1_scaffold_584_16
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22490..23485)
DNA (996bp) protein (332aa)
FemAB family n=6 Tax=Bifidobacterium RepID=D6DCT8_BIFLN
FemAB family.
Uncharacterized protein {ECO:0000313|EMBL:CCY95699.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_069_242G1_scaffold_584_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23607..25160)
DNA (1554bp) protein (518aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=7 Tax=Bifidobacterium RepID=MURE_BIFLO
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
L3_069_242G1_scaffold_584_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25335..26087
DNA (753bp) protein (251aa)
RNA polymerase sigma-E factor n=10 Tax=Bifidobacterium RepID=Q8G4M2_BIFLO
RNA polymerase sigma factor RpoE
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:AEI97264.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_069_242G1_scaffold_584_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26087..26407
DNA (321bp) protein (107aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=B3DQS3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25158.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_069_242G1_scaffold_584_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26673..27617)
DNA (945bp) protein (315aa)
Galactose mutarotase n=7 Tax=Bifidobacterium RepID=B3DQS5_BIFLD
aldose-1-epimerase
Galactose mutarotase {ECO:0000313|EMBL:ACD97671.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_069_242G1_scaffold_584_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27742..28698)
DNA (957bp) protein (319aa)
Galactose mutarotase n=11 Tax=Bifidobacterium RepID=B3DQS6_BIFLD
aldose-1-epimerase
Galactose mutarotase {ECO:0000313|EMBL:ACD97672.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_069_242G1_scaffold_584_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28989..29981
DNA (993bp) protein (331aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=12 Tax=Bifidobacterium RepID=ISPH_BIFLO
L3_069_242G1_scaffold_584_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30021..30530)
DNA (510bp) protein (170aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=14 Tax=Bifidobacterium RepID=B3DQS8_BIFLD
hypothetical protein
L3_069_242G1_scaffold_584_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30624..31682)
DNA (1059bp) protein (353aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:KEY31459.1}; EC=1.2.1.12 {ECO:0000313|EMBL:KEY31459.1};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Glyceraldehyde-3-phosphate dehydrogenase n=18 Tax=Bifidobacterium RepID=B3DQS9_BIFLD
glyceraldehyde 3-phosphate dehydrogenase
L3_069_242G1_scaffold_584_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31923..32498)
DNA (576bp) protein (192aa)
Thiamine pyrophosphokinase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8APJ7_BIFLN
thiamine pyrophosphokinase
Thiamine pyrophosphokinase {ECO:0000313|EMBL:KEY25587.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_069_242G1_scaffold_584_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32936..33571
DNA (636bp) protein (212aa)
Translation initiation factor 3 n=13 Tax=Bifidobacterium RepID=B3DQT2_BIFLD
infC; infc
Translation initiation factor IF-3 {ECO:0000313|EMBL:KEY31456.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_069_242G1_scaffold_584_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


33552..33746
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=20 Tax=Bifidobacterium RepID=RL35_BIFLD
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_069_242G1_scaffold_584_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


33799..34182
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=14 Tax=Bifidobacterium RepID=RL20_BIFLD
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L3_069_242G1_scaffold_584_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34243..35178
DNA (936bp) protein (312aa)
Tyrosine recombinase XerD n=14 Tax=Bifidobacterium RepID=D6DCV1_BIFLN
integrase/recombinase
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_069_242G1_scaffold_584_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35306..38152
DNA (2847bp) protein (949aa)
ABC-type antimicrobial peptide transport system, ATPase component n=11 Tax=Bifidobacterium RepID=D6DCV2_BIFLN
salx-type abc antimicrobial peptide transport system atpase component
ABC transporter {ECO:0000313|EMBL:KEY25581.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying items 1-30 of 57 in total

View Taxonomy