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L3_069_242G1_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 175 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_42_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

L3_069_242G1_scaffold_42_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(170..1252)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45692.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Spore germination protein
L3_069_242G1_scaffold_42_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1294..2403)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45693.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Ger(x)C family germination protein
L3_069_242G1_scaffold_42_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2400..3917)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45694.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spore germination protein KA
L3_069_242G1_scaffold_42_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4067..4429
DNA (363bp) protein (121aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YVA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26802.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative BlaI family transcriptional regulator
L3_069_242G1_scaffold_42_6
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4433..6568
DNA (2136bp) protein (712aa)
Peptidase, M56 family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BLW2_9CLOT
Peptidase, M56 family {ECO:0000313|EMBL:ERI73190.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
peptidase M56 family protein
L3_069_242G1_scaffold_42_7
unknown

Not on your lists

6565..7134
DNA (570bp) protein (190aa)

This feature has no annotations

L3_069_242G1_scaffold_42_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7263..7742
DNA (480bp) protein (160aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X991_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EGJ48060.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_069_242G1_scaffold_42_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7726..9099
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X992_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48061.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_42_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10027..11514)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45700.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_42_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11765..12538
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45701.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
transporter
L3_069_242G1_scaffold_42_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12742..13209)
DNA (468bp) protein (156aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative deaminase (EC:3.5.4.-)
Cytosine deaminase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG15_9FIRM
L3_069_242G1_scaffold_42_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13281..16793)
DNA (3513bp) protein (1171aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mfd; transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGB9_9FIRM
L3_069_242G1_scaffold_42_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17135..18322)
DNA (1188bp) protein (396aa)
Stage II sporulation protein P n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG21_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:EGJ45702.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spoIIP; stage II sporulation protein P
L3_069_242G1_scaffold_42_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18516..19775)
DNA (1260bp) protein (420aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA C-acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S060_9FIRM
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:EQN60278.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_42_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20004..22154)
DNA (2151bp) protein (717aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFF0_9FIRM
L3_069_242G1_scaffold_42_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22583..22849)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFF1_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
30S ribosomal protein S15
L3_069_242G1_scaffold_42_18
unknown

Not on your lists

comp(23046..23366)
DNA (321bp) protein (107aa)

This feature has no annotations

L3_069_242G1_scaffold_42_19
unknown

Not on your lists

23491..23655
DNA (165bp) protein (55aa)

This feature has no annotations

L3_069_242G1_scaffold_42_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24637..26325)
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46347.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_42_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26356..26703)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46346.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_42_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26914..27909)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45727.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC transporter membrane component
L3_069_242G1_scaffold_42_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27896..29011)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45728.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC transporter membrane component
L3_069_242G1_scaffold_42_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29014..30633)
DNA (1620bp) protein (540aa)
Simple sugar transport system ATP-binding protein (EC:3.6.3.-)
Simple sugar transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC5_9FIRM
Simple sugar transport system ATP-binding protein {ECO:0000313|EMBL:EGJ45729.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_42_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30817..32073)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45730.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
basic membrane lipoprotein
L3_069_242G1_scaffold_42_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32160..32738)
DNA (579bp) protein (193aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Xanthine phosphoribosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGC7_9FIRM
xanthine phosphoribosyltransferase
L3_069_242G1_scaffold_42_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33067..34326)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45746.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Na+/H+-dicarboxylate symporters
L3_069_242G1_scaffold_42_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34708..35529
DNA (822bp) protein (274aa)
ParB family chromosome partitioning protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE3_9FIRM
ParB family chromosome partitioning protein {ECO:0000313|EMBL:EGJ45747.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ParB family chromosome partition protein
L3_069_242G1_scaffold_42_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35798..36556
DNA (759bp) protein (253aa)
Chromosome partitioning protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE4_9FIRM
Chromosome partitioning protein {ECO:0000313|EMBL:EGJ45748.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
parA; chromosome partitioning protein ParA
L3_069_242G1_scaffold_42_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36627..37520
DNA (894bp) protein (298aa)
ParB family chromosome partitioning protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGE5_9FIRM
ParB family chromosome partitioning protein {ECO:0000313|EMBL:EGJ45749.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
parB; chromosome partitioning protein ParB
Displaying items 1-30 of 175 in total

View Taxonomy