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L3_069_242G1_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_110_1
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..3453)
DNA (3453bp) protein (1151aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QEC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ20591.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
S-layer domain-containing protein
L3_069_242G1_scaffold_110_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3780..4595)
DNA (816bp) protein (272aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE96_9FIRM
L3_069_242G1_scaffold_110_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4721..5584)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46395.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_110_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5590..6900)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46394.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_110_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6893..8671)
DNA (1779bp) protein (593aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
two-component histidine kinase (EC:2.7.13.3)
Two-component system, OmpR family, sensor histidine kinase VicK n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE93_9FIRM
L3_069_242G1_scaffold_110_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8840..9559)
DNA (720bp) protein (240aa)
Two-component system, OmpR family, response regulator VicR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE92_9FIRM
Two-component system, OmpR family, response regulator VicR {ECO:0000313|EMBL:EGJ46392.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L3_069_242G1_scaffold_110_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9575..10111)
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE91_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EGJ46391.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_110_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10485..10796
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46701.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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11262..12809
DNA (1548bp) protein (516aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD04_9FIRM
putative isomerase
L3_069_242G1_scaffold_110_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12924..13775)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48201.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13978..14523
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48203.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14520..14987
DNA (468bp) protein (156aa)
Predicted flavin-nucleotide-binding protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LBF7_RUMC1
Predicted flavin-nucleotide-binding protein
Predicted flavin-nucleotide-binding protein {ECO:0000313|EMBL:CBL16952.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_069_242G1_scaffold_110_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15184..15549
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG8_9FIRM
UPF0122 protein HMPREF0866_00286 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15553..16929
DNA (1377bp) protein (459aa)
Signal recognition particle protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG7_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ffh; signal recognition particle protein
L3_069_242G1_scaffold_110_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17032..17271
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG6_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsP; 30S ribosomal protein S16
L3_069_242G1_scaffold_110_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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17290..17520
DNA (231bp) protein (77aa)
UPF0109 protein HMPREF0866_00283 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG5_9FIRM
UPF0109 protein HMPREF0866_00283 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17608..18105
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG4_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rimM; Ribosome maturation factor RimM
L3_069_242G1_scaffold_110_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18216..18587
DNA (372bp) protein (124aa)
desulfoferrodoxin ferrous iron-binding domain (EC:1.15.1.2)
Desulfoferrodoxin n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RYZ2_9FIRM
Desulfoferrodoxin {ECO:0000313|EMBL:EQN60559.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_110_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18645..19445)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48152.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
N-acetylmuramoyl-L-alanine amidase family 2
L3_069_242G1_scaffold_110_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19582..20904
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48153.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Na+/H+ antiporter
L3_069_242G1_scaffold_110_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20940..22346
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47773.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative surface layer protein
L3_069_242G1_scaffold_110_22
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22478..24634
DNA (2157bp) protein (719aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
transposase IS4 family protein
L3_069_242G1_scaffold_110_23
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(24956..25153)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13352.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_069_242G1_scaffold_110_24
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25134..25412)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5R6_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU26825.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_069_242G1_scaffold_110_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25418..26107)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48132.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
winged helix family two component transcriptional regulator
L3_069_242G1_scaffold_110_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26166..27428)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48133.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27448..28125)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48134.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_110_28
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28145..28549)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72315.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L3_069_242G1_scaffold_110_29
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(28579..29232)
DNA (654bp) protein (218aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAP6_9FIRM
L3_069_242G1_scaffold_110_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29506..30759
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA2_9FIRM
Displaying items 1-30 of 117 in total

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